Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 KRT18P68-201ENST00000392293 1000 ntBASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.08■□□□□ 0.81
PCDHGA1Q9Y5H4 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.08■□□□□ 0.8
PCDHGA1Q9Y5H4 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.08■□□□□ 0.8
PCDHGA1Q9Y5H4 AC139530.1-201ENST00000575312 1977 ntBASIC20.08■□□□□ 0.8
PCDHGA1Q9Y5H4 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PCDHGA1Q9Y5H4 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 Z99916.2-201ENST00000604037 246 ntBASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 AC003102.1-202ENST00000563394 1796 ntBASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA1Q9Y5H4 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 FAM210CP-201ENST00000445714 574 ntBASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA1Q9Y5H4 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.05■□□□□ 0.8
PCDHGA1Q9Y5H4 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
PCDHGA1Q9Y5H4 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHGA1Q9Y5H4 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHGA1Q9Y5H4 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.05■□□□□ 0.8
PCDHGA1Q9Y5H4 ECEL1P3-201ENST00000427961 737 ntBASIC20.05■□□□□ 0.8
PCDHGA1Q9Y5H4 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHGA1Q9Y5H4 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHGA1Q9Y5H4 AC069544.1-201ENST00000609399 999 ntBASIC20.05■□□□□ 0.8
PCDHGA1Q9Y5H4 REXO1L12P-201ENST00000622156 912 ntBASIC20.05■□□□□ 0.8
PCDHGA1Q9Y5H4 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
PCDHGA1Q9Y5H4 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHGA1Q9Y5H4 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.05■□□□□ 0.8
PCDHGA1Q9Y5H4 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.05■□□□□ 0.8
PCDHGA1Q9Y5H4 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHGA1Q9Y5H4 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHGA1Q9Y5H4 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHGA1Q9Y5H4 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.04■□□□□ 0.8
PCDHGA1Q9Y5H4 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.04■□□□□ 0.8
PCDHGA1Q9Y5H4 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHGA1Q9Y5H4 SNORA78-201ENST00000459373 127 ntBASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms