Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDD3Q9Y3P4 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RHBDD3Q9Y3P4 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
RHBDD3Q9Y3P4 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
RHBDD3Q9Y3P4 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDD3Q9Y3P4 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.21■□□□□ 0.51
RHBDD3Q9Y3P4 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
RHBDD3Q9Y3P4 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.21■□□□□ 0.51
RHBDD3Q9Y3P4 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDD3Q9Y3P4 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDD3Q9Y3P4 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.21■□□□□ 0.51
RHBDD3Q9Y3P4 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
RHBDD3Q9Y3P4 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDD3Q9Y3P4 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
RHBDD3Q9Y3P4 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RHBDD3Q9Y3P4 AC005224.4-201ENST00000583262 1652 ntBASIC18.21■□□□□ 0.51
RHBDD3Q9Y3P4 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
RHBDD3Q9Y3P4 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
RHBDD3Q9Y3P4 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
RHBDD3Q9Y3P4 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.21■□□□□ 0.5
RHBDD3Q9Y3P4 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 LINC01006-201ENST00000333319 2292 ntBASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 AC055733.4-201ENST00000638462 1354 ntBASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 MIR638-201ENST00000385237 100 ntBASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 AC012414.1-201ENST00000556676 535 ntBASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.2■□□□□ 0.5
RHBDD3Q9Y3P4 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.19■□□□□ 0.5
RHBDD3Q9Y3P4 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.19■□□□□ 0.5
RHBDD3Q9Y3P4 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RHBDD3Q9Y3P4 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RHBDD3Q9Y3P4 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RHBDD3Q9Y3P4 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.19■□□□□ 0.5
RHBDD3Q9Y3P4 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.19■□□□□ 0.5
RHBDD3Q9Y3P4 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RHBDD3Q9Y3P4 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RHBDD3Q9Y3P4 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
RHBDD3Q9Y3P4 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
RHBDD3Q9Y3P4 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RHBDD3Q9Y3P4 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 AC105265.2-201ENST00000467189 838 ntBASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RHBDD3Q9Y3P4 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.17■□□□□ 0.5
RHBDD3Q9Y3P4 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RHBDD3Q9Y3P4 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.17■□□□□ 0.5
RHBDD3Q9Y3P4 MTURN-203ENST00000409688 843 ntTSL 2 BASIC18.17■□□□□ 0.5
RHBDD3Q9Y3P4 AL354811.1-201ENST00000610286 706 ntBASIC18.17■□□□□ 0.5
RHBDD3Q9Y3P4 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RHBDD3Q9Y3P4 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.17■□□□□ 0.5
RHBDD3Q9Y3P4 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RHBDD3Q9Y3P4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RHBDD3Q9Y3P4 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RHBDD3Q9Y3P4 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
RHBDD3Q9Y3P4 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RHBDD3Q9Y3P4 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RHBDD3Q9Y3P4 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RHBDD3Q9Y3P4 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RHBDD3Q9Y3P4 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RHBDD3Q9Y3P4 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.16■□□□□ 0.5
RHBDD3Q9Y3P4 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RHBDD3Q9Y3P4 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms