Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC39.86■■■■□ 3.97
SHROOM4Q9ULL8 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC39.86■■■■□ 3.97
SHROOM4Q9ULL8 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC39.86■■■■□ 3.97
SHROOM4Q9ULL8 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC39.86■■■■□ 3.97
SHROOM4Q9ULL8 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC39.86■■■■□ 3.97
SHROOM4Q9ULL8 GATS-209ENST00000454084 1030 ntTSL 3 BASIC39.86■■■■□ 3.97
SHROOM4Q9ULL8 FAM197Y4-202ENST00000622692 608 ntBASIC39.86■■■■□ 3.97
SHROOM4Q9ULL8 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC39.86■■■■□ 3.97
SHROOM4Q9ULL8 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC39.86■■■■□ 3.97
SHROOM4Q9ULL8 RARG-204ENST00000543726 1779 ntTSL 2 BASIC39.85■■■■□ 3.97
SHROOM4Q9ULL8 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC39.85■■■■□ 3.97
SHROOM4Q9ULL8 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC39.85■■■■□ 3.97
SHROOM4Q9ULL8 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC39.85■■■■□ 3.97
SHROOM4Q9ULL8 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC39.85■■■■□ 3.97
SHROOM4Q9ULL8 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC39.85■■■■□ 3.97
SHROOM4Q9ULL8 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC39.85■■■■□ 3.97
SHROOM4Q9ULL8 CD44-222ENST00000526025 1052 ntTSL 2 BASIC39.85■■■■□ 3.97
SHROOM4Q9ULL8 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC39.85■■■■□ 3.97
SHROOM4Q9ULL8 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC39.84■■■■□ 3.97
SHROOM4Q9ULL8 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC39.84■■■■□ 3.97
SHROOM4Q9ULL8 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC39.84■■■■□ 3.97
SHROOM4Q9ULL8 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC39.84■■■■□ 3.97
SHROOM4Q9ULL8 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC39.84■■■■□ 3.97
SHROOM4Q9ULL8 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC39.84■■■■□ 3.97
SHROOM4Q9ULL8 Z99916.2-201ENST00000604037 246 ntBASIC39.84■■■■□ 3.97
SHROOM4Q9ULL8 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC39.84■■■■□ 3.97
SHROOM4Q9ULL8 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC39.84■■■■□ 3.97
SHROOM4Q9ULL8 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC39.84■■■■□ 3.97
SHROOM4Q9ULL8 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC39.84■■■■□ 3.97
SHROOM4Q9ULL8 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC39.83■■■■□ 3.97
SHROOM4Q9ULL8 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC39.83■■■■□ 3.97
SHROOM4Q9ULL8 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC39.83■■■■□ 3.97
SHROOM4Q9ULL8 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC39.83■■■■□ 3.97
SHROOM4Q9ULL8 KRT16P2-201ENST00000414673 1423 ntBASIC39.83■■■■□ 3.97
SHROOM4Q9ULL8 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC39.83■■■■□ 3.97
SHROOM4Q9ULL8 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC39.83■■■■□ 3.97
SHROOM4Q9ULL8 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC39.82■■■■□ 3.97
SHROOM4Q9ULL8 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC39.82■■■■□ 3.97
SHROOM4Q9ULL8 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC39.82■■■■□ 3.97
SHROOM4Q9ULL8 AL591742.1-201ENST00000604433 565 ntBASIC39.82■■■■□ 3.97
SHROOM4Q9ULL8 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC39.82■■■■□ 3.97
SHROOM4Q9ULL8 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC39.82■■■■□ 3.96
SHROOM4Q9ULL8 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC39.82■■■■□ 3.96
SHROOM4Q9ULL8 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC39.82■■■■□ 3.96
SHROOM4Q9ULL8 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC39.82■■■■□ 3.96
SHROOM4Q9ULL8 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC39.82■■■■□ 3.96
SHROOM4Q9ULL8 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC39.82■■■■□ 3.96
SHROOM4Q9ULL8 AC069544.1-201ENST00000609399 999 ntBASIC39.81■■■■□ 3.96
SHROOM4Q9ULL8 AC010542.4-201ENST00000563151 1910 ntBASIC39.81■■■■□ 3.96
SHROOM4Q9ULL8 AC127496.7-201ENST00000625110 1798 ntBASIC39.81■■■■□ 3.96
SHROOM4Q9ULL8 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC39.81■■■■□ 3.96
SHROOM4Q9ULL8 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC39.81■■■■□ 3.96
SHROOM4Q9ULL8 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC39.81■■■■□ 3.96
SHROOM4Q9ULL8 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC39.81■■■■□ 3.96
SHROOM4Q9ULL8 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC39.81■■■■□ 3.96
SHROOM4Q9ULL8 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC39.81■■■■□ 3.96
SHROOM4Q9ULL8 PBX1-209ENST00000485769 834 ntTSL 2 BASIC39.81■■■■□ 3.96
SHROOM4Q9ULL8 C1QBPP2-201ENST00000528754 825 ntBASIC39.81■■■■□ 3.96
SHROOM4Q9ULL8 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC39.81■■■■□ 3.96
SHROOM4Q9ULL8 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC39.81■■■■□ 3.96
SHROOM4Q9ULL8 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC39.81■■■■□ 3.96
SHROOM4Q9ULL8 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC39.8■■■■□ 3.96
SHROOM4Q9ULL8 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC39.8■■■■□ 3.96
SHROOM4Q9ULL8 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC39.8■■■■□ 3.96
SHROOM4Q9ULL8 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC39.8■■■■□ 3.96
SHROOM4Q9ULL8 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC39.8■■■■□ 3.96
SHROOM4Q9ULL8 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC39.8■■■■□ 3.96
SHROOM4Q9ULL8 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC39.8■■■■□ 3.96
SHROOM4Q9ULL8 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC39.8■■■■□ 3.96
SHROOM4Q9ULL8 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC39.8■■■■□ 3.96
SHROOM4Q9ULL8 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC39.8■■■■□ 3.96
SHROOM4Q9ULL8 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC39.8■■■■□ 3.96
SHROOM4Q9ULL8 AC092053.2-201ENST00000640557 1818 ntBASIC39.8■■■■□ 3.96
SHROOM4Q9ULL8 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC39.79■■■■□ 3.96
SHROOM4Q9ULL8 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC39.79■■■■□ 3.96
SHROOM4Q9ULL8 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC39.79■■■■□ 3.96
SHROOM4Q9ULL8 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC39.79■■■■□ 3.96
SHROOM4Q9ULL8 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC39.79■■■■□ 3.96
SHROOM4Q9ULL8 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC39.79■■■■□ 3.96
SHROOM4Q9ULL8 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC39.79■■■■□ 3.96
SHROOM4Q9ULL8 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC39.78■■■■□ 3.96
SHROOM4Q9ULL8 GALC-202ENST00000393568 2054 ntTSL 2 BASIC39.78■■■■□ 3.96
SHROOM4Q9ULL8 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC39.78■■■■□ 3.96
SHROOM4Q9ULL8 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC39.78■■■■□ 3.96
SHROOM4Q9ULL8 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC39.78■■■■□ 3.96
SHROOM4Q9ULL8 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC39.78■■■■□ 3.96
SHROOM4Q9ULL8 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC39.78■■■■□ 3.96
SHROOM4Q9ULL8 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC39.78■■■■□ 3.96
SHROOM4Q9ULL8 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC39.78■■■■□ 3.96
SHROOM4Q9ULL8 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC39.78■■■■□ 3.96
SHROOM4Q9ULL8 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC39.78■■■■□ 3.96
SHROOM4Q9ULL8 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC39.77■■■■□ 3.96
SHROOM4Q9ULL8 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC39.77■■■■□ 3.96
SHROOM4Q9ULL8 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC39.77■■■■□ 3.96
SHROOM4Q9ULL8 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC39.77■■■■□ 3.96
SHROOM4Q9ULL8 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC39.77■■■■□ 3.96
SHROOM4Q9ULL8 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC39.77■■■■□ 3.96
SHROOM4Q9ULL8 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC39.77■■■■□ 3.96
SHROOM4Q9ULL8 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC39.77■■■■□ 3.96
SHROOM4Q9ULL8 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC39.77■■■■□ 3.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms