Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
DDX28Q9NUL7 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DDX28Q9NUL7 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
DDX28Q9NUL7 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.95■□□□□ 0.62
DDX28Q9NUL7 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DDX28Q9NUL7 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DDX28Q9NUL7 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
DDX28Q9NUL7 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
DDX28Q9NUL7 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC18.95■□□□□ 0.62
DDX28Q9NUL7 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
DDX28Q9NUL7 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
DDX28Q9NUL7 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
DDX28Q9NUL7 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.95■□□□□ 0.62
DDX28Q9NUL7 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC18.95■□□□□ 0.62
DDX28Q9NUL7 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.95■□□□□ 0.62
DDX28Q9NUL7 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
DDX28Q9NUL7 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.94■□□□□ 0.62
DDX28Q9NUL7 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
DDX28Q9NUL7 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
DDX28Q9NUL7 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
DDX28Q9NUL7 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
DDX28Q9NUL7 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DDX28Q9NUL7 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.94■□□□□ 0.62
DDX28Q9NUL7 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
DDX28Q9NUL7 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
DDX28Q9NUL7 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.94■□□□□ 0.62
DDX28Q9NUL7 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.94■□□□□ 0.62
DDX28Q9NUL7 AC087239.1-201ENST00000622671 572 ntBASIC18.94■□□□□ 0.62
DDX28Q9NUL7 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
DDX28Q9NUL7 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DDX28Q9NUL7 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
DDX28Q9NUL7 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
DDX28Q9NUL7 AL020996.1-203ENST00000536896 2307 ntBASIC18.94■□□□□ 0.62
DDX28Q9NUL7 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 AC010525.1-201ENST00000585559 441 ntBASIC18.93■□□□□ 0.62
DDX28Q9NUL7 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.93■□□□□ 0.62
DDX28Q9NUL7 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 AC087289.5-201ENST00000586076 3175 ntBASIC18.92■□□□□ 0.62
DDX28Q9NUL7 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
DDX28Q9NUL7 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
DDX28Q9NUL7 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
DDX28Q9NUL7 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
DDX28Q9NUL7 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC18.91■□□□□ 0.62
DDX28Q9NUL7 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
DDX28Q9NUL7 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
DDX28Q9NUL7 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
DDX28Q9NUL7 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
DDX28Q9NUL7 AC096631.2-201ENST00000436136 790 ntBASIC18.91■□□□□ 0.62
DDX28Q9NUL7 AC010141.3-201ENST00000456659 717 ntBASIC18.91■□□□□ 0.62
DDX28Q9NUL7 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC18.91■□□□□ 0.62
DDX28Q9NUL7 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
DDX28Q9NUL7 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms