Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
LIME1Q9H400 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.3■□□□□ 0.52
LIME1Q9H400 AC016405.3-201ENST00000607710 860 ntBASIC18.3■□□□□ 0.52
LIME1Q9H400 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIME1Q9H400 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC18.3■□□□□ 0.52
LIME1Q9H400 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIME1Q9H400 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC18.29■□□□□ 0.52
LIME1Q9H400 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIME1Q9H400 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
LIME1Q9H400 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIME1Q9H400 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIME1Q9H400 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIME1Q9H400 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC18.29■□□□□ 0.52
LIME1Q9H400 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIME1Q9H400 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIME1Q9H400 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.29■□□□□ 0.52
LIME1Q9H400 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.29■□□□□ 0.52
LIME1Q9H400 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.29■□□□□ 0.52
LIME1Q9H400 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.29■□□□□ 0.52
LIME1Q9H400 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIME1Q9H400 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIME1Q9H400 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIME1Q9H400 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIME1Q9H400 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.29■□□□□ 0.52
LIME1Q9H400 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIME1Q9H400 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIME1Q9H400 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIME1Q9H400 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIME1Q9H400 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIME1Q9H400 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIME1Q9H400 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIME1Q9H400 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIME1Q9H400 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.28■□□□□ 0.52
LIME1Q9H400 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.28■□□□□ 0.52
LIME1Q9H400 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
LIME1Q9H400 ESRRAP1-201ENST00000400596 1257 ntBASIC18.28■□□□□ 0.52
LIME1Q9H400 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIME1Q9H400 GCSHP5-201ENST00000443090 522 ntBASIC18.28■□□□□ 0.52
LIME1Q9H400 AL158047.1-201ENST00000445918 881 ntBASIC18.28■□□□□ 0.52
LIME1Q9H400 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIME1Q9H400 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIME1Q9H400 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIME1Q9H400 AC083880.1-201ENST00000608266 535 ntBASIC18.28■□□□□ 0.52
LIME1Q9H400 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIME1Q9H400 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
LIME1Q9H400 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIME1Q9H400 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.28■□□□□ 0.52
LIME1Q9H400 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.28■□□□□ 0.52
LIME1Q9H400 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
LIME1Q9H400 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LIME1Q9H400 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
LIME1Q9H400 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
LIME1Q9H400 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
LIME1Q9H400 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
LIME1Q9H400 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIME1Q9H400 BX276092.2-201ENST00000417668 665 ntBASIC18.27■□□□□ 0.52
LIME1Q9H400 AL596275.1-201ENST00000423464 877 ntBASIC18.27■□□□□ 0.52
LIME1Q9H400 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIME1Q9H400 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LIME1Q9H400 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.27■□□□□ 0.52
LIME1Q9H400 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
LIME1Q9H400 AP006294.2-201ENST00000641667 209 ntBASIC18.27■□□□□ 0.52
LIME1Q9H400 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.27■□□□□ 0.52
LIME1Q9H400 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.27■□□□□ 0.52
LIME1Q9H400 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LIME1Q9H400 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIME1Q9H400 LINC01960-201ENST00000563759 1884 ntBASIC18.26■□□□□ 0.51
LIME1Q9H400 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIME1Q9H400 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIME1Q9H400 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
LIME1Q9H400 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.26■□□□□ 0.51
LIME1Q9H400 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.26■□□□□ 0.51
LIME1Q9H400 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
LIME1Q9H400 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.26■□□□□ 0.51
LIME1Q9H400 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
LIME1Q9H400 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIME1Q9H400 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.26■□□□□ 0.51
LIME1Q9H400 AC092118.2-201ENST00000613495 667 ntBASIC18.26■□□□□ 0.51
LIME1Q9H400 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIME1Q9H400 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIME1Q9H400 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.26■□□□□ 0.51
LIME1Q9H400 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIME1Q9H400 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIME1Q9H400 AP004607.7-201ENST00000527152 1677 ntBASIC18.25■□□□□ 0.51
LIME1Q9H400 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.25■□□□□ 0.51
LIME1Q9H400 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.25■□□□□ 0.51
LIME1Q9H400 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.25■□□□□ 0.51
LIME1Q9H400 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.25■□□□□ 0.51
LIME1Q9H400 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.25■□□□□ 0.51
LIME1Q9H400 OR10C1-204ENST00000622521 1039 ntBASIC18.25■□□□□ 0.51
LIME1Q9H400 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
LIME1Q9H400 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIME1Q9H400 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIME1Q9H400 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.25■□□□□ 0.51
LIME1Q9H400 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC18.25■□□□□ 0.51
LIME1Q9H400 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LIME1Q9H400 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LIME1Q9H400 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIME1Q9H400 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIME1Q9H400 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms