Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CDT1Q9H211 Z98882.1-201ENST00000622160 2253 ntBASIC22.68■■□□□ 1.22
CDT1Q9H211 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CDT1Q9H211 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC22.67■■□□□ 1.22
CDT1Q9H211 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CDT1Q9H211 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CDT1Q9H211 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC22.67■■□□□ 1.22
CDT1Q9H211 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
CDT1Q9H211 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC22.67■■□□□ 1.22
CDT1Q9H211 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
CDT1Q9H211 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC22.67■■□□□ 1.22
CDT1Q9H211 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CDT1Q9H211 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
CDT1Q9H211 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CDT1Q9H211 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.67■■□□□ 1.22
CDT1Q9H211 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC22.67■■□□□ 1.22
CDT1Q9H211 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
CDT1Q9H211 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CDT1Q9H211 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CDT1Q9H211 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
CDT1Q9H211 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CDT1Q9H211 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CDT1Q9H211 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CDT1Q9H211 AC093787.1-201ENST00000450396 207 ntBASIC22.66■■□□□ 1.22
CDT1Q9H211 OR10C1-204ENST00000622521 1039 ntBASIC22.66■■□□□ 1.22
CDT1Q9H211 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC22.66■■□□□ 1.22
CDT1Q9H211 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC22.66■■□□□ 1.22
CDT1Q9H211 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC22.66■■□□□ 1.22
CDT1Q9H211 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC22.66■■□□□ 1.22
CDT1Q9H211 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC22.66■■□□□ 1.22
CDT1Q9H211 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CDT1Q9H211 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDT1Q9H211 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDT1Q9H211 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.65■■□□□ 1.22
CDT1Q9H211 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
CDT1Q9H211 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDT1Q9H211 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDT1Q9H211 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDT1Q9H211 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
CDT1Q9H211 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC22.65■■□□□ 1.22
CDT1Q9H211 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC22.65■■□□□ 1.22
CDT1Q9H211 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
CDT1Q9H211 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC22.65■■□□□ 1.22
CDT1Q9H211 AC069236.1-201ENST00000604339 616 ntBASIC22.65■■□□□ 1.22
CDT1Q9H211 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDT1Q9H211 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
CDT1Q9H211 AC079834.2-201ENST00000609776 1949 ntBASIC22.65■■□□□ 1.22
CDT1Q9H211 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDT1Q9H211 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC22.65■■□□□ 1.22
CDT1Q9H211 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
CDT1Q9H211 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CDT1Q9H211 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CDT1Q9H211 LINC00565-201ENST00000562710 2331 ntBASIC22.64■■□□□ 1.22
CDT1Q9H211 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CDT1Q9H211 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CDT1Q9H211 AL355802.2-201ENST00000402069 882 ntBASIC22.64■■□□□ 1.21
CDT1Q9H211 PTPA-214ENST00000423100 988 ntTSL 2 BASIC22.64■■□□□ 1.21
CDT1Q9H211 RARRES2P4-201ENST00000514074 484 ntBASIC22.64■■□□□ 1.21
CDT1Q9H211 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC22.64■■□□□ 1.21
CDT1Q9H211 PALM-207ENST00000590161 2137 ntTSL 4 BASIC22.64■■□□□ 1.21
CDT1Q9H211 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CDT1Q9H211 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CDT1Q9H211 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
CDT1Q9H211 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC22.64■■□□□ 1.21
CDT1Q9H211 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
CDT1Q9H211 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CDT1Q9H211 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CDT1Q9H211 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CDT1Q9H211 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CDT1Q9H211 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CDT1Q9H211 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
CDT1Q9H211 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CDT1Q9H211 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC22.63■■□□□ 1.21
CDT1Q9H211 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
CDT1Q9H211 EMC9-206ENST00000560403 872 ntTSL 2 BASIC22.63■■□□□ 1.21
CDT1Q9H211 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC22.63■■□□□ 1.21
CDT1Q9H211 AC008694.1-202ENST00000636953 945 ntBASIC22.63■■□□□ 1.21
CDT1Q9H211 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
CDT1Q9H211 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.63■■□□□ 1.21
CDT1Q9H211 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CDT1Q9H211 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CDT1Q9H211 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CDT1Q9H211 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CDT1Q9H211 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CDT1Q9H211 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
CDT1Q9H211 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CDT1Q9H211 PBX1-209ENST00000485769 834 ntTSL 2 BASIC22.62■■□□□ 1.21
CDT1Q9H211 MARS-234ENST00000630571 216 ntTSL 5 BASIC22.62■■□□□ 1.21
CDT1Q9H211 MARS-235ENST00000630803 183 ntTSL 3 BASIC22.62■■□□□ 1.21
CDT1Q9H211 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC22.62■■□□□ 1.21
CDT1Q9H211 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC22.62■■□□□ 1.21
CDT1Q9H211 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC22.62■■□□□ 1.21
CDT1Q9H211 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CDT1Q9H211 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CDT1Q9H211 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC22.62■■□□□ 1.21
CDT1Q9H211 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC22.61■■□□□ 1.21
CDT1Q9H211 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CDT1Q9H211 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CDT1Q9H211 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CDT1Q9H211 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms