Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC23.3■■□□□ 1.32
UPF3AQ9H1J1 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
UPF3AQ9H1J1 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC23.3■■□□□ 1.32
UPF3AQ9H1J1 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
UPF3AQ9H1J1 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC23.3■■□□□ 1.32
UPF3AQ9H1J1 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
UPF3AQ9H1J1 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
UPF3AQ9H1J1 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
UPF3AQ9H1J1 C11orf96-202ENST00000528572 1834 ntBASIC23.3■■□□□ 1.32
UPF3AQ9H1J1 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
UPF3AQ9H1J1 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
UPF3AQ9H1J1 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
UPF3AQ9H1J1 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
UPF3AQ9H1J1 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
UPF3AQ9H1J1 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
UPF3AQ9H1J1 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
UPF3AQ9H1J1 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
UPF3AQ9H1J1 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC23.29■■□□□ 1.32
UPF3AQ9H1J1 RPPH1-201ENST00000516869 333 ntBASIC23.29■■□□□ 1.32
UPF3AQ9H1J1 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
UPF3AQ9H1J1 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC23.29■■□□□ 1.32
UPF3AQ9H1J1 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
UPF3AQ9H1J1 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.29■■□□□ 1.32
UPF3AQ9H1J1 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC23.29■■□□□ 1.32
UPF3AQ9H1J1 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
UPF3AQ9H1J1 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC23.28■■□□□ 1.32
UPF3AQ9H1J1 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC23.28■■□□□ 1.32
UPF3AQ9H1J1 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC23.28■■□□□ 1.32
UPF3AQ9H1J1 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
UPF3AQ9H1J1 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
UPF3AQ9H1J1 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
UPF3AQ9H1J1 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
UPF3AQ9H1J1 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
UPF3AQ9H1J1 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 AC026471.6-201ENST00000622954 1905 ntBASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 AC092368.3-202ENST00000574180 1591 ntBASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 AC007322.3-201ENST00000426526 701 ntBASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 SLC29A4P2-201ENST00000504749 1089 ntBASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC23.27■■□□□ 1.32
UPF3AQ9H1J1 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 PTPA-214ENST00000423100 988 ntTSL 2 BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 RN7SL471P-201ENST00000580476 299 ntBASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UPF3AQ9H1J1 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
UPF3AQ9H1J1 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
UPF3AQ9H1J1 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
UPF3AQ9H1J1 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
UPF3AQ9H1J1 KRT17P3-201ENST00000420566 1262 ntBASIC23.25■■□□□ 1.31
UPF3AQ9H1J1 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC23.25■■□□□ 1.31
UPF3AQ9H1J1 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
UPF3AQ9H1J1 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC23.25■■□□□ 1.31
UPF3AQ9H1J1 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
UPF3AQ9H1J1 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
UPF3AQ9H1J1 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC23.25■■□□□ 1.31
UPF3AQ9H1J1 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC23.25■■□□□ 1.31
UPF3AQ9H1J1 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
UPF3AQ9H1J1 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC23.25■■□□□ 1.31
UPF3AQ9H1J1 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
UPF3AQ9H1J1 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
UPF3AQ9H1J1 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC23.24■■□□□ 1.31
UPF3AQ9H1J1 MFF-205ENST00000354503 1085 ntTSL 2 BASIC23.24■■□□□ 1.31
UPF3AQ9H1J1 MIR718-201ENST00000390190 70 ntBASIC23.24■■□□□ 1.31
UPF3AQ9H1J1 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
UPF3AQ9H1J1 C1QBPP2-201ENST00000528754 825 ntBASIC23.24■■□□□ 1.31
UPF3AQ9H1J1 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC23.24■■□□□ 1.31
UPF3AQ9H1J1 AC233263.1-201ENST00000578059 224 ntBASIC23.24■■□□□ 1.31
UPF3AQ9H1J1 NARF-205ENST00000412079 1760 ntTSL 5 BASIC23.24■■□□□ 1.31
UPF3AQ9H1J1 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
UPF3AQ9H1J1 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms