Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SHANK3Q9BYB0 AC080038.3-201ENST00000623346 1952 ntBASIC27.3■■□□□ 1.96
SHANK3Q9BYB0 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC27.3■■□□□ 1.96
SHANK3Q9BYB0 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC27.3■■□□□ 1.96
SHANK3Q9BYB0 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC27.3■■□□□ 1.96
SHANK3Q9BYB0 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SHANK3Q9BYB0 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC27.3■■□□□ 1.96
SHANK3Q9BYB0 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
SHANK3Q9BYB0 AC012618.2-201ENST00000428058 849 ntBASIC27.3■■□□□ 1.96
SHANK3Q9BYB0 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SHANK3Q9BYB0 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC27.3■■□□□ 1.96
SHANK3Q9BYB0 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC27.29■■□□□ 1.96
SHANK3Q9BYB0 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
SHANK3Q9BYB0 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
SHANK3Q9BYB0 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC27.29■■□□□ 1.96
SHANK3Q9BYB0 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SHANK3Q9BYB0 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
SHANK3Q9BYB0 POM121L13P-201ENST00000422362 380 ntBASIC27.29■■□□□ 1.96
SHANK3Q9BYB0 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC27.29■■□□□ 1.96
SHANK3Q9BYB0 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC27.29■■□□□ 1.96
SHANK3Q9BYB0 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC27.29■■□□□ 1.96
SHANK3Q9BYB0 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SHANK3Q9BYB0 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC27.29■■□□□ 1.96
SHANK3Q9BYB0 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC27.28■■□□□ 1.96
SHANK3Q9BYB0 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC27.28■■□□□ 1.96
SHANK3Q9BYB0 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SHANK3Q9BYB0 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SHANK3Q9BYB0 AC087633.2-202ENST00000565166 1439 ntBASIC27.28■■□□□ 1.96
SHANK3Q9BYB0 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC27.28■■□□□ 1.96
SHANK3Q9BYB0 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC27.27■■□□□ 1.96
SHANK3Q9BYB0 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC27.27■■□□□ 1.96
SHANK3Q9BYB0 FAM210CP-201ENST00000445714 574 ntBASIC27.27■■□□□ 1.96
SHANK3Q9BYB0 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC27.27■■□□□ 1.96
SHANK3Q9BYB0 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC27.27■■□□□ 1.96
SHANK3Q9BYB0 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC27.27■■□□□ 1.96
SHANK3Q9BYB0 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC27.27■■□□□ 1.96
SHANK3Q9BYB0 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SHANK3Q9BYB0 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SHANK3Q9BYB0 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SHANK3Q9BYB0 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC27.27■■□□□ 1.96
SHANK3Q9BYB0 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SHANK3Q9BYB0 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC27.27■■□□□ 1.96
SHANK3Q9BYB0 REXO2-216ENST00000544196 452 ntTSL 3 BASIC27.27■■□□□ 1.96
SHANK3Q9BYB0 AC073912.3-201ENST00000624414 853 ntBASIC27.27■■□□□ 1.96
SHANK3Q9BYB0 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC27.26■■□□□ 1.96
SHANK3Q9BYB0 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC27.26■■□□□ 1.96
SHANK3Q9BYB0 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC27.26■■□□□ 1.95
SHANK3Q9BYB0 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
SHANK3Q9BYB0 SNORA78-201ENST00000459373 127 ntBASIC27.26■■□□□ 1.95
SHANK3Q9BYB0 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC27.26■■□□□ 1.95
SHANK3Q9BYB0 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
SHANK3Q9BYB0 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC27.25■■□□□ 1.95
SHANK3Q9BYB0 AC092053.2-201ENST00000640557 1818 ntBASIC27.25■■□□□ 1.95
SHANK3Q9BYB0 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SHANK3Q9BYB0 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC27.25■■□□□ 1.95
SHANK3Q9BYB0 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
SHANK3Q9BYB0 KRT17P3-201ENST00000420566 1262 ntBASIC27.25■■□□□ 1.95
SHANK3Q9BYB0 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SHANK3Q9BYB0 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SHANK3Q9BYB0 NARF-205ENST00000412079 1760 ntTSL 5 BASIC27.25■■□□□ 1.95
SHANK3Q9BYB0 ECEL1P3-201ENST00000427961 737 ntBASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 OR2A1-AS1-207ENST00000486094 819 ntBASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC27.24■■□□□ 1.95
SHANK3Q9BYB0 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC27.23■■□□□ 1.95
SHANK3Q9BYB0 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC27.23■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms