Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC35.13■■■■□ 3.21
IFT140Q96RY7 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC35.13■■■■□ 3.21
IFT140Q96RY7 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
IFT140Q96RY7 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC35.13■■■■□ 3.21
IFT140Q96RY7 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC35.13■■■■□ 3.21
IFT140Q96RY7 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC35.12■■■■□ 3.21
IFT140Q96RY7 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC35.12■■■■□ 3.21
IFT140Q96RY7 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC35.12■■■■□ 3.21
IFT140Q96RY7 AC110285.5-201ENST00000611501 352 ntBASIC35.12■■■■□ 3.21
IFT140Q96RY7 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
IFT140Q96RY7 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC35.12■■■■□ 3.21
IFT140Q96RY7 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC35.12■■■■□ 3.21
IFT140Q96RY7 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC35.12■■■■□ 3.21
IFT140Q96RY7 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC35.12■■■■□ 3.21
IFT140Q96RY7 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
IFT140Q96RY7 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
IFT140Q96RY7 PRKY-204ENST00000533551 1019 ntBASIC35.11■■■■□ 3.21
IFT140Q96RY7 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC35.11■■■■□ 3.21
IFT140Q96RY7 NXN-202ENST00000537628 1340 ntTSL 3 BASIC35.11■■■■□ 3.21
IFT140Q96RY7 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC35.11■■■■□ 3.21
IFT140Q96RY7 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
IFT140Q96RY7 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC35.11■■■■□ 3.21
IFT140Q96RY7 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC35.1■■■■□ 3.21
IFT140Q96RY7 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC35.1■■■■□ 3.21
IFT140Q96RY7 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC35.1■■■■□ 3.21
IFT140Q96RY7 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC35.1■■■■□ 3.21
IFT140Q96RY7 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC35.1■■■■□ 3.21
IFT140Q96RY7 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
IFT140Q96RY7 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC35.1■■■■□ 3.21
IFT140Q96RY7 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC35.1■■■■□ 3.21
IFT140Q96RY7 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC35.1■■■■□ 3.21
IFT140Q96RY7 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC35.09■■■■□ 3.21
IFT140Q96RY7 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
IFT140Q96RY7 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC35.09■■■■□ 3.21
IFT140Q96RY7 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
IFT140Q96RY7 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC35.09■■■■□ 3.21
IFT140Q96RY7 ANOS2P-203ENST00000472227 1816 ntBASIC35.09■■■■□ 3.21
IFT140Q96RY7 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
IFT140Q96RY7 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC35.09■■■■□ 3.21
IFT140Q96RY7 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC35.09■■■■□ 3.21
IFT140Q96RY7 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC35.09■■■■□ 3.21
IFT140Q96RY7 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
IFT140Q96RY7 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC35.08■■■■□ 3.21
IFT140Q96RY7 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC35.08■■■■□ 3.21
IFT140Q96RY7 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC35.08■■■■□ 3.21
IFT140Q96RY7 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
IFT140Q96RY7 ARMC10P1-201ENST00000313754 855 ntBASIC35.08■■■■□ 3.21
IFT140Q96RY7 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC35.08■■■■□ 3.21
IFT140Q96RY7 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC35.08■■■■□ 3.21
IFT140Q96RY7 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
IFT140Q96RY7 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC35.08■■■■□ 3.21
IFT140Q96RY7 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC35.08■■■■□ 3.21
IFT140Q96RY7 AC092865.7-201ENST00000641832 219 ntBASIC35.08■■■■□ 3.21
IFT140Q96RY7 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
IFT140Q96RY7 CYP21A1P-202ENST00000354927 1481 ntBASIC35.07■■■■□ 3.21
IFT140Q96RY7 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC35.07■■■■□ 3.2
IFT140Q96RY7 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC35.07■■■■□ 3.2
IFT140Q96RY7 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC35.07■■■■□ 3.2
IFT140Q96RY7 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC35.07■■■■□ 3.2
IFT140Q96RY7 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC35.07■■■■□ 3.2
IFT140Q96RY7 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC35.07■■■■□ 3.2
IFT140Q96RY7 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC35.07■■■■□ 3.2
IFT140Q96RY7 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC35.07■■■■□ 3.2
IFT140Q96RY7 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.2
IFT140Q96RY7 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
IFT140Q96RY7 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
IFT140Q96RY7 KRASP1-201ENST00000407852 552 ntBASIC35.06■■■■□ 3.2
IFT140Q96RY7 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC35.06■■■■□ 3.2
IFT140Q96RY7 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
IFT140Q96RY7 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
IFT140Q96RY7 TPM1-226ENST00000560959 925 ntTSL 2 BASIC35.05■■■■□ 3.2
IFT140Q96RY7 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC35.05■■■■□ 3.2
IFT140Q96RY7 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC35.05■■■■□ 3.2
IFT140Q96RY7 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC35.05■■■■□ 3.2
IFT140Q96RY7 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC35.05■■■■□ 3.2
IFT140Q96RY7 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
IFT140Q96RY7 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC35.05■■■■□ 3.2
IFT140Q96RY7 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC35.05■■■■□ 3.2
IFT140Q96RY7 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC35.05■■■■□ 3.2
IFT140Q96RY7 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC35.04■■■■□ 3.2
IFT140Q96RY7 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC35.04■■■■□ 3.2
IFT140Q96RY7 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
IFT140Q96RY7 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC35.04■■■■□ 3.2
IFT140Q96RY7 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
IFT140Q96RY7 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
IFT140Q96RY7 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
IFT140Q96RY7 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC35.04■■■■□ 3.2
IFT140Q96RY7 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC35.04■■■■□ 3.2
IFT140Q96RY7 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC35.04■■■■□ 3.2
IFT140Q96RY7 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC35.03■■■■□ 3.2
IFT140Q96RY7 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC35.03■■■■□ 3.2
IFT140Q96RY7 RNF146-204ENST00000476956 884 ntTSL 2 BASIC35.03■■■■□ 3.2
IFT140Q96RY7 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC35.03■■■■□ 3.2
IFT140Q96RY7 AL049597.2-201ENST00000565575 961 ntBASIC35.03■■■■□ 3.2
IFT140Q96RY7 AL590326.2-201ENST00000625139 305 ntBASIC35.03■■■■□ 3.2
IFT140Q96RY7 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
IFT140Q96RY7 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC35.03■■■■□ 3.2
IFT140Q96RY7 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC35.03■■■■□ 3.2
IFT140Q96RY7 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
IFT140Q96RY7 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC35.03■■■■□ 3.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms