Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC27.66■■■□□ 2.02
USHBP1Q8N6Y0 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
USHBP1Q8N6Y0 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
USHBP1Q8N6Y0 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 PEX7-202ENST00000367756 680 ntTSL 3 BASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 AL596275.1-201ENST00000423464 877 ntBASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
USHBP1Q8N6Y0 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC27.64■■■□□ 2.02
USHBP1Q8N6Y0 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
USHBP1Q8N6Y0 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
USHBP1Q8N6Y0 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC27.64■■■□□ 2.02
USHBP1Q8N6Y0 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
USHBP1Q8N6Y0 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC27.64■■■□□ 2.01
USHBP1Q8N6Y0 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC27.64■■■□□ 2.01
USHBP1Q8N6Y0 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
USHBP1Q8N6Y0 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC27.64■■■□□ 2.01
USHBP1Q8N6Y0 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
USHBP1Q8N6Y0 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
USHBP1Q8N6Y0 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
USHBP1Q8N6Y0 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
USHBP1Q8N6Y0 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
USHBP1Q8N6Y0 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC27.63■■■□□ 2.01
USHBP1Q8N6Y0 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC27.63■■■□□ 2.01
USHBP1Q8N6Y0 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC27.63■■■□□ 2.01
USHBP1Q8N6Y0 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
USHBP1Q8N6Y0 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC27.62■■■□□ 2.01
USHBP1Q8N6Y0 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC27.62■■■□□ 2.01
USHBP1Q8N6Y0 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
USHBP1Q8N6Y0 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC27.62■■■□□ 2.01
USHBP1Q8N6Y0 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
USHBP1Q8N6Y0 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
USHBP1Q8N6Y0 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC27.62■■■□□ 2.01
USHBP1Q8N6Y0 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC27.62■■■□□ 2.01
USHBP1Q8N6Y0 STX5-203ENST00000394690 1568 ntTSL 5 BASIC27.61■■■□□ 2.01
USHBP1Q8N6Y0 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
USHBP1Q8N6Y0 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC27.61■■■□□ 2.01
USHBP1Q8N6Y0 ME2-206ENST00000638410 2289 ntTSL 5 BASIC27.61■■■□□ 2.01
USHBP1Q8N6Y0 ME2-210ENST00000639255 2262 ntTSL 5 BASIC27.61■■■□□ 2.01
USHBP1Q8N6Y0 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC27.61■■■□□ 2.01
USHBP1Q8N6Y0 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
USHBP1Q8N6Y0 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
USHBP1Q8N6Y0 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
USHBP1Q8N6Y0 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
USHBP1Q8N6Y0 MCRIP2P1-201ENST00000394346 511 ntBASIC27.61■■■□□ 2.01
USHBP1Q8N6Y0 AC100791.3-201ENST00000617619 330 ntBASIC27.61■■■□□ 2.01
USHBP1Q8N6Y0 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
USHBP1Q8N6Y0 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
USHBP1Q8N6Y0 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
USHBP1Q8N6Y0 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC27.6■■■□□ 2.01
USHBP1Q8N6Y0 GALC-202ENST00000393568 2054 ntTSL 2 BASIC27.6■■■□□ 2.01
USHBP1Q8N6Y0 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
USHBP1Q8N6Y0 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
USHBP1Q8N6Y0 PTPA-214ENST00000423100 988 ntTSL 2 BASIC27.6■■■□□ 2.01
USHBP1Q8N6Y0 UNC93B4-201ENST00000505679 747 ntBASIC27.6■■■□□ 2.01
USHBP1Q8N6Y0 ARL16-209ENST00000573715 763 ntTSL 3 BASIC27.6■■■□□ 2.01
USHBP1Q8N6Y0 ARL16-211ENST00000576135 694 ntTSL 3 BASIC27.6■■■□□ 2.01
USHBP1Q8N6Y0 AC060766.5-201ENST00000590539 871 ntBASIC27.6■■■□□ 2.01
USHBP1Q8N6Y0 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC27.6■■■□□ 2.01
USHBP1Q8N6Y0 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
USHBP1Q8N6Y0 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
USHBP1Q8N6Y0 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
USHBP1Q8N6Y0 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
USHBP1Q8N6Y0 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC27.59■■■□□ 2.01
USHBP1Q8N6Y0 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC27.59■■■□□ 2.01
USHBP1Q8N6Y0 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
USHBP1Q8N6Y0 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC27.59■■■□□ 2.01
USHBP1Q8N6Y0 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC27.59■■■□□ 2.01
USHBP1Q8N6Y0 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC27.59■■■□□ 2.01
USHBP1Q8N6Y0 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC27.59■■■□□ 2.01
USHBP1Q8N6Y0 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC27.59■■■□□ 2.01
USHBP1Q8N6Y0 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC27.59■■■□□ 2.01
USHBP1Q8N6Y0 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
USHBP1Q8N6Y0 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC27.58■■■□□ 2.01
USHBP1Q8N6Y0 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC27.58■■■□□ 2.01
USHBP1Q8N6Y0 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
USHBP1Q8N6Y0 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC27.58■■■□□ 2.01
USHBP1Q8N6Y0 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
USHBP1Q8N6Y0 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
USHBP1Q8N6Y0 AL589743.5-201ENST00000616611 1050 ntBASIC27.58■■■□□ 2.01
USHBP1Q8N6Y0 AP006294.2-201ENST00000641667 209 ntBASIC27.58■■■□□ 2.01
USHBP1Q8N6Y0 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
USHBP1Q8N6Y0 GCK-205ENST00000437084 1385 ntTSL 5 BASIC27.58■■■□□ 2.01
USHBP1Q8N6Y0 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC27.58■■■□□ 2.01
USHBP1Q8N6Y0 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC27.58■■■□□ 2.01
USHBP1Q8N6Y0 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC27.57■■■□□ 2
USHBP1Q8N6Y0 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC27.57■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms