Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.96■□□□□ 0.95
HDDC3Q8N4P3 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.96■□□□□ 0.95
HDDC3Q8N4P3 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.96■□□□□ 0.95
HDDC3Q8N4P3 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.96■□□□□ 0.95
HDDC3Q8N4P3 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.96■□□□□ 0.95
HDDC3Q8N4P3 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HDDC3Q8N4P3 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.96■□□□□ 0.95
HDDC3Q8N4P3 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HDDC3Q8N4P3 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HDDC3Q8N4P3 AC010980.2-201ENST00000587099 1412 ntBASIC20.95■□□□□ 0.95
HDDC3Q8N4P3 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 AC091799.1-201ENST00000422823 811 ntBASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HDDC3Q8N4P3 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 ESRRAP1-201ENST00000400596 1257 ntBASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HDDC3Q8N4P3 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 AC098590.1-201ENST00000468126 897 ntBASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 AC097658.1-201ENST00000475555 843 ntBASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDDC3Q8N4P3 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 GCSHP5-201ENST00000443090 522 ntBASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 AL158047.1-201ENST00000445918 881 ntBASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 CDV3P1-201ENST00000471403 739 ntBASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HDDC3Q8N4P3 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDDC3Q8N4P3 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDDC3Q8N4P3 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.91■□□□□ 0.94
HDDC3Q8N4P3 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDDC3Q8N4P3 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDDC3Q8N4P3 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDDC3Q8N4P3 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.91■□□□□ 0.94
HDDC3Q8N4P3 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
HDDC3Q8N4P3 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.91■□□□□ 0.94
HDDC3Q8N4P3 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.91■□□□□ 0.94
HDDC3Q8N4P3 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.91■□□□□ 0.94
HDDC3Q8N4P3 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.91■□□□□ 0.94
HDDC3Q8N4P3 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.91■□□□□ 0.94
HDDC3Q8N4P3 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDDC3Q8N4P3 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HDDC3Q8N4P3 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDDC3Q8N4P3 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HDDC3Q8N4P3 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.9■□□□□ 0.94
HDDC3Q8N4P3 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HDDC3Q8N4P3 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
HDDC3Q8N4P3 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HDDC3Q8N4P3 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms