Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 PALM-208ENST00000592155 2272 ntTSL 4 BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC23.95■■□□□ 1.42
SH3RF1Q7Z6J0 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC23.95■■□□□ 1.42
SH3RF1Q7Z6J0 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC23.95■■□□□ 1.42
SH3RF1Q7Z6J0 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
SH3RF1Q7Z6J0 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
SH3RF1Q7Z6J0 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
SH3RF1Q7Z6J0 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
SH3RF1Q7Z6J0 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
SH3RF1Q7Z6J0 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.94■■□□□ 1.42
SH3RF1Q7Z6J0 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SH3RF1Q7Z6J0 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SH3RF1Q7Z6J0 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SH3RF1Q7Z6J0 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC23.94■■□□□ 1.42
SH3RF1Q7Z6J0 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
SH3RF1Q7Z6J0 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SH3RF1Q7Z6J0 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC23.94■■□□□ 1.42
SH3RF1Q7Z6J0 AP004607.7-201ENST00000527152 1677 ntBASIC23.94■■□□□ 1.42
SH3RF1Q7Z6J0 FEM1AP4-201ENST00000443167 1987 ntBASIC23.94■■□□□ 1.42
SH3RF1Q7Z6J0 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SH3RF1Q7Z6J0 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SH3RF1Q7Z6J0 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SH3RF1Q7Z6J0 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SH3RF1Q7Z6J0 AL034346.1-201ENST00000568244 1277 ntBASIC23.93■■□□□ 1.42
SH3RF1Q7Z6J0 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SH3RF1Q7Z6J0 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC23.93■■□□□ 1.42
SH3RF1Q7Z6J0 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SH3RF1Q7Z6J0 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC23.93■■□□□ 1.42
SH3RF1Q7Z6J0 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC23.93■■□□□ 1.42
SH3RF1Q7Z6J0 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SH3RF1Q7Z6J0 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SH3RF1Q7Z6J0 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 AC003102.1-202ENST00000563394 1796 ntBASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 AC009237.3-201ENST00000393279 1427 ntBASIC23.92■■□□□ 1.42
SH3RF1Q7Z6J0 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC23.91■■□□□ 1.42
SH3RF1Q7Z6J0 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC23.91■■□□□ 1.42
SH3RF1Q7Z6J0 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SH3RF1Q7Z6J0 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
SH3RF1Q7Z6J0 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
SH3RF1Q7Z6J0 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SH3RF1Q7Z6J0 SERP1-208ENST00000491660 830 ntTSL 2 BASIC23.91■■□□□ 1.42
SH3RF1Q7Z6J0 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC23.91■■□□□ 1.42
SH3RF1Q7Z6J0 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
SH3RF1Q7Z6J0 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SH3RF1Q7Z6J0 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC23.91■■□□□ 1.42
SH3RF1Q7Z6J0 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SH3RF1Q7Z6J0 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
SH3RF1Q7Z6J0 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SH3RF1Q7Z6J0 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SH3RF1Q7Z6J0 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC23.9■■□□□ 1.42
SH3RF1Q7Z6J0 AC098590.1-201ENST00000468126 897 ntBASIC23.9■■□□□ 1.42
SH3RF1Q7Z6J0 MIR4758-201ENST00000577688 71 ntBASIC23.9■■□□□ 1.42
SH3RF1Q7Z6J0 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC23.9■■□□□ 1.42
SH3RF1Q7Z6J0 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SH3RF1Q7Z6J0 AC010536.3-201ENST00000620306 533 ntBASIC23.9■■□□□ 1.42
SH3RF1Q7Z6J0 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SH3RF1Q7Z6J0 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
SH3RF1Q7Z6J0 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC23.89■■□□□ 1.42
SH3RF1Q7Z6J0 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.42
SH3RF1Q7Z6J0 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
SH3RF1Q7Z6J0 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC23.89■■□□□ 1.42
SH3RF1Q7Z6J0 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC23.89■■□□□ 1.41
SH3RF1Q7Z6J0 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC23.89■■□□□ 1.41
SH3RF1Q7Z6J0 SLC7A5P1-201ENST00000568957 537 ntBASIC23.89■■□□□ 1.41
SH3RF1Q7Z6J0 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC23.89■■□□□ 1.41
SH3RF1Q7Z6J0 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
SH3RF1Q7Z6J0 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SH3RF1Q7Z6J0 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
SH3RF1Q7Z6J0 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
SH3RF1Q7Z6J0 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC23.88■■□□□ 1.41
SH3RF1Q7Z6J0 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SH3RF1Q7Z6J0 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SH3RF1Q7Z6J0 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SH3RF1Q7Z6J0 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SH3RF1Q7Z6J0 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SH3RF1Q7Z6J0 MIPEPP3-201ENST00000412105 444 ntBASIC23.88■■□□□ 1.41
SH3RF1Q7Z6J0 UQCRFS1P1-201ENST00000435169 820 ntBASIC23.88■■□□□ 1.41
SH3RF1Q7Z6J0 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SH3RF1Q7Z6J0 MARS-234ENST00000630571 216 ntTSL 5 BASIC23.88■■□□□ 1.41
SH3RF1Q7Z6J0 MARS-235ENST00000630803 183 ntTSL 3 BASIC23.88■■□□□ 1.41
SH3RF1Q7Z6J0 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SH3RF1Q7Z6J0 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
SH3RF1Q7Z6J0 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
SH3RF1Q7Z6J0 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms