Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.19■□□□□ 0.98
USP39Q53GS9 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.19■□□□□ 0.98
USP39Q53GS9 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.19■□□□□ 0.98
USP39Q53GS9 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.19■□□□□ 0.98
USP39Q53GS9 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP39Q53GS9 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP39Q53GS9 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP39Q53GS9 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP39Q53GS9 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP39Q53GS9 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.18■□□□□ 0.98
USP39Q53GS9 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP39Q53GS9 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP39Q53GS9 AC139530.1-201ENST00000575312 1977 ntBASIC21.18■□□□□ 0.98
USP39Q53GS9 GCSHP5-201ENST00000443090 522 ntBASIC21.18■□□□□ 0.98
USP39Q53GS9 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.18■□□□□ 0.98
USP39Q53GS9 AC098590.1-201ENST00000468126 897 ntBASIC21.18■□□□□ 0.98
USP39Q53GS9 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.18■□□□□ 0.98
USP39Q53GS9 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.18■□□□□ 0.98
USP39Q53GS9 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
USP39Q53GS9 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP39Q53GS9 KRT16P2-201ENST00000414673 1423 ntBASIC21.18■□□□□ 0.98
USP39Q53GS9 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP39Q53GS9 AC010980.2-201ENST00000587099 1412 ntBASIC21.18■□□□□ 0.98
USP39Q53GS9 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP39Q53GS9 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP39Q53GS9 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP39Q53GS9 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP39Q53GS9 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP39Q53GS9 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP39Q53GS9 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP39Q53GS9 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP39Q53GS9 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP39Q53GS9 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP39Q53GS9 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.17■□□□□ 0.98
USP39Q53GS9 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.17■□□□□ 0.98
USP39Q53GS9 AC006058.3-201ENST00000606217 1069 ntBASIC21.17■□□□□ 0.98
USP39Q53GS9 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.17■□□□□ 0.98
USP39Q53GS9 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP39Q53GS9 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP39Q53GS9 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP39Q53GS9 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
USP39Q53GS9 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP39Q53GS9 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
USP39Q53GS9 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.16■□□□□ 0.98
USP39Q53GS9 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
USP39Q53GS9 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP39Q53GS9 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
USP39Q53GS9 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
USP39Q53GS9 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.16■□□□□ 0.98
USP39Q53GS9 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP39Q53GS9 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP39Q53GS9 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP39Q53GS9 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.16■□□□□ 0.98
USP39Q53GS9 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.16■□□□□ 0.98
USP39Q53GS9 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
USP39Q53GS9 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.16■□□□□ 0.98
USP39Q53GS9 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.16■□□□□ 0.98
USP39Q53GS9 AC142381.4-202ENST00000563973 229 ntBASIC21.16■□□□□ 0.98
USP39Q53GS9 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP39Q53GS9 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP39Q53GS9 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
USP39Q53GS9 AC080038.3-201ENST00000623346 1952 ntBASIC21.16■□□□□ 0.98
USP39Q53GS9 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP39Q53GS9 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.15■□□□□ 0.98
USP39Q53GS9 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
USP39Q53GS9 RBM17P2-201ENST00000616397 1405 ntBASIC21.15■□□□□ 0.98
USP39Q53GS9 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP39Q53GS9 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.15■□□□□ 0.98
USP39Q53GS9 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP39Q53GS9 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP39Q53GS9 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.15■□□□□ 0.98
USP39Q53GS9 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.15■□□□□ 0.98
USP39Q53GS9 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.15■□□□□ 0.98
USP39Q53GS9 AL158047.1-201ENST00000445918 881 ntBASIC21.15■□□□□ 0.98
USP39Q53GS9 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.15■□□□□ 0.98
USP39Q53GS9 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.15■□□□□ 0.98
USP39Q53GS9 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
USP39Q53GS9 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP39Q53GS9 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP39Q53GS9 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP39Q53GS9 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP39Q53GS9 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
USP39Q53GS9 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP39Q53GS9 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
USP39Q53GS9 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP39Q53GS9 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP39Q53GS9 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP39Q53GS9 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
USP39Q53GS9 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
USP39Q53GS9 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.14■□□□□ 0.97
USP39Q53GS9 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
USP39Q53GS9 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.14■□□□□ 0.97
USP39Q53GS9 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.14■□□□□ 0.97
USP39Q53GS9 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.14■□□□□ 0.97
USP39Q53GS9 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
USP39Q53GS9 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP39Q53GS9 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP39Q53GS9 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
USP39Q53GS9 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.14■□□□□ 0.97
USP39Q53GS9 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms