Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC27.32■■□□□ 1.96
NCBP3Q53F19 AC010326.4-201ENST00000604665 891 ntBASIC27.32■■□□□ 1.96
NCBP3Q53F19 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC27.32■■□□□ 1.96
NCBP3Q53F19 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC27.32■■□□□ 1.96
NCBP3Q53F19 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
NCBP3Q53F19 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
NCBP3Q53F19 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC27.31■■□□□ 1.96
NCBP3Q53F19 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC27.31■■□□□ 1.96
NCBP3Q53F19 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC27.31■■□□□ 1.96
NCBP3Q53F19 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC27.31■■□□□ 1.96
NCBP3Q53F19 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC27.31■■□□□ 1.96
NCBP3Q53F19 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
NCBP3Q53F19 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
NCBP3Q53F19 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
NCBP3Q53F19 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
NCBP3Q53F19 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC27.31■■□□□ 1.96
NCBP3Q53F19 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC27.31■■□□□ 1.96
NCBP3Q53F19 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC27.31■■□□□ 1.96
NCBP3Q53F19 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC27.31■■□□□ 1.96
NCBP3Q53F19 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC27.31■■□□□ 1.96
NCBP3Q53F19 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC27.31■■□□□ 1.96
NCBP3Q53F19 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC27.31■■□□□ 1.96
NCBP3Q53F19 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
NCBP3Q53F19 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
NCBP3Q53F19 AC007322.4-201ENST00000509611 723 ntBASIC27.3■■□□□ 1.96
NCBP3Q53F19 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
NCBP3Q53F19 FGF8-207ENST00000618991 856 ntTSL 3 BASIC27.3■■□□□ 1.96
NCBP3Q53F19 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
NCBP3Q53F19 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC27.3■■□□□ 1.96
NCBP3Q53F19 GAS2L1P2-201ENST00000436355 1356 ntBASIC27.3■■□□□ 1.96
NCBP3Q53F19 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
NCBP3Q53F19 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
NCBP3Q53F19 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
NCBP3Q53F19 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC27.29■■□□□ 1.96
NCBP3Q53F19 AC091799.1-201ENST00000422823 811 ntBASIC27.29■■□□□ 1.96
NCBP3Q53F19 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
NCBP3Q53F19 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC27.29■■□□□ 1.96
NCBP3Q53F19 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
NCBP3Q53F19 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC27.29■■□□□ 1.96
NCBP3Q53F19 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
NCBP3Q53F19 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
NCBP3Q53F19 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC27.29■■□□□ 1.96
NCBP3Q53F19 PALM-207ENST00000590161 2137 ntTSL 4 BASIC27.29■■□□□ 1.96
NCBP3Q53F19 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
NCBP3Q53F19 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC27.29■■□□□ 1.96
NCBP3Q53F19 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC27.29■■□□□ 1.96
NCBP3Q53F19 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC27.29■■□□□ 1.96
NCBP3Q53F19 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
NCBP3Q53F19 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC27.28■■□□□ 1.96
NCBP3Q53F19 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
NCBP3Q53F19 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
NCBP3Q53F19 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC27.28■■□□□ 1.96
NCBP3Q53F19 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
NCBP3Q53F19 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
NCBP3Q53F19 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
NCBP3Q53F19 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC27.28■■□□□ 1.96
NCBP3Q53F19 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
NCBP3Q53F19 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
NCBP3Q53F19 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
NCBP3Q53F19 PARP1-202ENST00000366792 553 ntTSL 3 BASIC27.28■■□□□ 1.96
NCBP3Q53F19 AL162412.1-201ENST00000567129 965 ntBASIC27.28■■□□□ 1.96
NCBP3Q53F19 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC27.28■■□□□ 1.96
NCBP3Q53F19 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC27.28■■□□□ 1.96
NCBP3Q53F19 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC27.28■■□□□ 1.96
NCBP3Q53F19 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
NCBP3Q53F19 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
NCBP3Q53F19 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC27.27■■□□□ 1.96
NCBP3Q53F19 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
NCBP3Q53F19 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
NCBP3Q53F19 SAPCD2P1-201ENST00000395413 1184 ntBASIC27.27■■□□□ 1.96
NCBP3Q53F19 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC27.27■■□□□ 1.96
NCBP3Q53F19 AC091489.1-201ENST00000563866 691 ntTSL 3 BASIC27.27■■□□□ 1.96
NCBP3Q53F19 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
NCBP3Q53F19 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC27.27■■□□□ 1.96
NCBP3Q53F19 AC022517.1-201ENST00000592429 346 ntBASIC27.27■■□□□ 1.96
NCBP3Q53F19 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC27.27■■□□□ 1.96
NCBP3Q53F19 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
NCBP3Q53F19 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
NCBP3Q53F19 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
NCBP3Q53F19 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
NCBP3Q53F19 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC27.26■■□□□ 1.96
NCBP3Q53F19 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
NCBP3Q53F19 UQCRFS1P1-201ENST00000435169 820 ntBASIC27.26■■□□□ 1.95
NCBP3Q53F19 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
NCBP3Q53F19 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC27.26■■□□□ 1.95
NCBP3Q53F19 AC137761.2-201ENST00000561729 223 ntBASIC27.26■■□□□ 1.95
NCBP3Q53F19 AC145350.3-201ENST00000569033 163 ntBASIC27.26■■□□□ 1.95
NCBP3Q53F19 AC010536.3-201ENST00000620306 533 ntBASIC27.26■■□□□ 1.95
NCBP3Q53F19 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
NCBP3Q53F19 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC27.26■■□□□ 1.95
NCBP3Q53F19 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
NCBP3Q53F19 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
NCBP3Q53F19 AC011484.1-201ENST00000377652 1995 ntBASIC27.26■■□□□ 1.95
NCBP3Q53F19 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC27.25■■□□□ 1.95
NCBP3Q53F19 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC27.25■■□□□ 1.95
NCBP3Q53F19 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
NCBP3Q53F19 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
NCBP3Q53F19 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
NCBP3Q53F19 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
NCBP3Q53F19 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms