Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CCDC40Q4G0X9 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC22.89■■□□□ 1.25
CCDC40Q4G0X9 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
CCDC40Q4G0X9 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC40Q4G0X9 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC40Q4G0X9 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
CCDC40Q4G0X9 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC40Q4G0X9 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC40Q4G0X9 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC40Q4G0X9 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC40Q4G0X9 AC027612.3-201ENST00000413684 1047 ntBASIC22.88■■□□□ 1.25
CCDC40Q4G0X9 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC22.88■■□□□ 1.25
CCDC40Q4G0X9 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC22.88■■□□□ 1.25
CCDC40Q4G0X9 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC40Q4G0X9 AL121603.2-201ENST00000557373 2117 ntBASIC22.88■■□□□ 1.25
CCDC40Q4G0X9 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC40Q4G0X9 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC40Q4G0X9 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC40Q4G0X9 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC22.87■■□□□ 1.25
CCDC40Q4G0X9 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC40Q4G0X9 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC22.87■■□□□ 1.25
CCDC40Q4G0X9 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC22.87■■□□□ 1.25
CCDC40Q4G0X9 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC40Q4G0X9 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC22.87■■□□□ 1.25
CCDC40Q4G0X9 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
CCDC40Q4G0X9 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC22.86■■□□□ 1.25
CCDC40Q4G0X9 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCDC40Q4G0X9 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC22.86■■□□□ 1.25
CCDC40Q4G0X9 KRT87P-202ENST00000534226 1464 ntBASIC22.86■■□□□ 1.25
CCDC40Q4G0X9 AC061975.6-201ENST00000579045 1553 ntBASIC22.86■■□□□ 1.25
CCDC40Q4G0X9 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC22.86■■□□□ 1.25
CCDC40Q4G0X9 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCDC40Q4G0X9 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCDC40Q4G0X9 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC22.85■■□□□ 1.25
CCDC40Q4G0X9 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC40Q4G0X9 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC40Q4G0X9 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC40Q4G0X9 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC22.85■■□□□ 1.25
CCDC40Q4G0X9 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC22.85■■□□□ 1.25
CCDC40Q4G0X9 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC40Q4G0X9 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC22.85■■□□□ 1.25
CCDC40Q4G0X9 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC22.85■■□□□ 1.25
CCDC40Q4G0X9 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC40Q4G0X9 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC40Q4G0X9 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC40Q4G0X9 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 AK1-201ENST00000223836 736 ntTSL 3 BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC22.84■■□□□ 1.25
CCDC40Q4G0X9 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
CCDC40Q4G0X9 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC22.83■■□□□ 1.25
CCDC40Q4G0X9 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
CCDC40Q4G0X9 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
CCDC40Q4G0X9 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC22.83■■□□□ 1.25
CCDC40Q4G0X9 LINC02228-203ENST00000641970 1355 ntBASIC22.83■■□□□ 1.25
CCDC40Q4G0X9 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
CCDC40Q4G0X9 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC22.83■■□□□ 1.24
CCDC40Q4G0X9 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC22.83■■□□□ 1.24
CCDC40Q4G0X9 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 AP004607.4-201ENST00000530158 1459 ntBASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 JTB-203ENST00000368589 1216 ntTSL 2 BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC22.82■■□□□ 1.24
CCDC40Q4G0X9 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC40Q4G0X9 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC40Q4G0X9 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC40Q4G0X9 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC22.81■■□□□ 1.24
CCDC40Q4G0X9 AC008175.2-201ENST00000612840 297 ntBASIC22.81■■□□□ 1.24
CCDC40Q4G0X9 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CCDC40Q4G0X9 PLK5-205ENST00000642079 1969 ntBASIC22.81■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms