Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
CCDC144BQ3MJ40 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC24.18■■□□□ 1.46
CCDC144BQ3MJ40 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC144BQ3MJ40 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC24.18■■□□□ 1.46
CCDC144BQ3MJ40 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
CCDC144BQ3MJ40 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
CCDC144BQ3MJ40 AC133552.2-202ENST00000575694 574 ntBASIC24.18■■□□□ 1.46
CCDC144BQ3MJ40 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC24.18■■□□□ 1.46
CCDC144BQ3MJ40 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC144BQ3MJ40 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC144BQ3MJ40 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC144BQ3MJ40 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC144BQ3MJ40 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
CCDC144BQ3MJ40 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC144BQ3MJ40 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC24.17■■□□□ 1.46
CCDC144BQ3MJ40 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC144BQ3MJ40 APTR-203ENST00000430801 583 ntTSL 5 BASIC24.17■■□□□ 1.46
CCDC144BQ3MJ40 RGMA-211ENST00000557420 989 ntTSL 3 BASIC24.17■■□□□ 1.46
CCDC144BQ3MJ40 AC105036.2-201ENST00000569468 176 ntBASIC24.17■■□□□ 1.46
CCDC144BQ3MJ40 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC144BQ3MJ40 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CCDC144BQ3MJ40 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC24.17■■□□□ 1.46
CCDC144BQ3MJ40 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC24.17■■□□□ 1.46
CCDC144BQ3MJ40 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 AC069152.1-201ENST00000438030 544 ntBASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CCDC144BQ3MJ40 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC144BQ3MJ40 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC144BQ3MJ40 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC144BQ3MJ40 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC24.15■■□□□ 1.46
CCDC144BQ3MJ40 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC144BQ3MJ40 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
CCDC144BQ3MJ40 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CCDC144BQ3MJ40 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC24.15■■□□□ 1.46
CCDC144BQ3MJ40 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC24.15■■□□□ 1.46
CCDC144BQ3MJ40 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CCDC144BQ3MJ40 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CCDC144BQ3MJ40 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CCDC144BQ3MJ40 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CCDC144BQ3MJ40 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC144BQ3MJ40 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC144BQ3MJ40 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC24.14■■□□□ 1.45
CCDC144BQ3MJ40 UQCRFS1P1-201ENST00000435169 820 ntBASIC24.14■■□□□ 1.45
CCDC144BQ3MJ40 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC24.14■■□□□ 1.45
CCDC144BQ3MJ40 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC144BQ3MJ40 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC144BQ3MJ40 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CCDC144BQ3MJ40 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC24.14■■□□□ 1.45
CCDC144BQ3MJ40 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 EEF1DP3-203ENST00000566025 782 ntBASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 AL034346.1-201ENST00000568244 1277 ntBASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 MIR4651-201ENST00000582622 73 ntBASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
CCDC144BQ3MJ40 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC24.12■■□□□ 1.45
CCDC144BQ3MJ40 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC144BQ3MJ40 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC24.12■■□□□ 1.45
CCDC144BQ3MJ40 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC144BQ3MJ40 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC144BQ3MJ40 NAA20-201ENST00000310450 920 ntTSL 2 BASIC24.12■■□□□ 1.45
CCDC144BQ3MJ40 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC144BQ3MJ40 AC098934.4-201ENST00000564127 592 ntBASIC24.12■■□□□ 1.45
CCDC144BQ3MJ40 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC24.12■■□□□ 1.45
CCDC144BQ3MJ40 AC133041.1-202ENST00000642053 222 ntBASIC24.12■■□□□ 1.45
CCDC144BQ3MJ40 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC144BQ3MJ40 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC24.12■■□□□ 1.45
CCDC144BQ3MJ40 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
CCDC144BQ3MJ40 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC24.12■■□□□ 1.45
CCDC144BQ3MJ40 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC144BQ3MJ40 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC144BQ3MJ40 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
CCDC144BQ3MJ40 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC144BQ3MJ40 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
CCDC144BQ3MJ40 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms