Protein–RNA interactions for Protein: P49761

CLK3, Dual specificity protein kinase CLK3, humanhuman

Known RBP Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P49761 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLK3P49761 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLK3P49761 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLK3P49761 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CLK3P49761 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLK3P49761 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLK3P49761 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.67■□□□□ 0.74
CLK3P49761 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLK3P49761 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLK3P49761 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLK3P49761 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.67■□□□□ 0.74
CLK3P49761 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLK3P49761 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLK3P49761 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLK3P49761 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLK3P49761 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLK3P49761 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLK3P49761 AC027612.3-201ENST00000413684 1047 ntBASIC19.66■□□□□ 0.74
CLK3P49761 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.66■□□□□ 0.74
CLK3P49761 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLK3P49761 MIR6084-201ENST00000622012 110 ntBASIC19.66■□□□□ 0.74
CLK3P49761 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.66■□□□□ 0.74
CLK3P49761 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLK3P49761 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CLK3P49761 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLK3P49761 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLK3P49761 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLK3P49761 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CLK3P49761 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLK3P49761 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLK3P49761 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLK3P49761 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLK3P49761 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.65■□□□□ 0.74
CLK3P49761 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLK3P49761 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.65■□□□□ 0.74
CLK3P49761 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLK3P49761 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLK3P49761 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CLK3P49761 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CLK3P49761 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
CLK3P49761 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
CLK3P49761 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLK3P49761 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
CLK3P49761 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
CLK3P49761 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLK3P49761 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLK3P49761 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CLK3P49761 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.64■□□□□ 0.74
CLK3P49761 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
CLK3P49761 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CLK3P49761 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CLK3P49761 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CLK3P49761 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLK3P49761 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.64■□□□□ 0.73
CLK3P49761 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLK3P49761 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CLK3P49761 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.64■□□□□ 0.73
CLK3P49761 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLK3P49761 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLK3P49761 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.64■□□□□ 0.73
CLK3P49761 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLK3P49761 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.64■□□□□ 0.73
CLK3P49761 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLK3P49761 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CLK3P49761 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.63■□□□□ 0.73
CLK3P49761 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLK3P49761 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.63■□□□□ 0.73
CLK3P49761 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLK3P49761 FEM1AP1-201ENST00000431297 1995 ntBASIC19.63■□□□□ 0.73
CLK3P49761 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLK3P49761 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLK3P49761 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLK3P49761 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.63■□□□□ 0.73
CLK3P49761 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLK3P49761 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLK3P49761 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CLK3P49761 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.63■□□□□ 0.73
CLK3P49761 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.63■□□□□ 0.73
CLK3P49761 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.63■□□□□ 0.73
CLK3P49761 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.63■□□□□ 0.73
CLK3P49761 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLK3P49761 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLK3P49761 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CLK3P49761 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLK3P49761 LINC02228-203ENST00000641970 1355 ntBASIC19.62■□□□□ 0.73
CLK3P49761 AC123595.1-201ENST00000440769 1046 ntBASIC19.62■□□□□ 0.73
CLK3P49761 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLK3P49761 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.62■□□□□ 0.73
CLK3P49761 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLK3P49761 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLK3P49761 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLK3P49761 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLK3P49761 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLK3P49761 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLK3P49761 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLK3P49761 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CLK3P49761 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLK3P49761 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLK3P49761 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLK3P49761 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms