Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RFX3P48380 KRT87P-202ENST00000534226 1464 ntBASIC19.52■□□□□ 0.72
RFX3P48380 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
RFX3P48380 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.52■□□□□ 0.71
RFX3P48380 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
RFX3P48380 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.51■□□□□ 0.71
RFX3P48380 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.51■□□□□ 0.71
RFX3P48380 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.51■□□□□ 0.71
RFX3P48380 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
RFX3P48380 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RFX3P48380 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RFX3P48380 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
RFX3P48380 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
RFX3P48380 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RFX3P48380 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RFX3P48380 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
RFX3P48380 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
RFX3P48380 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RFX3P48380 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RFX3P48380 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RFX3P48380 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.5■□□□□ 0.71
RFX3P48380 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.5■□□□□ 0.71
RFX3P48380 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.5■□□□□ 0.71
RFX3P48380 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
RFX3P48380 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.5■□□□□ 0.71
RFX3P48380 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
RFX3P48380 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RFX3P48380 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.5■□□□□ 0.71
RFX3P48380 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RFX3P48380 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.49■□□□□ 0.71
RFX3P48380 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
RFX3P48380 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.49■□□□□ 0.71
RFX3P48380 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RFX3P48380 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.49■□□□□ 0.71
RFX3P48380 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.49■□□□□ 0.71
RFX3P48380 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RFX3P48380 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.49■□□□□ 0.71
RFX3P48380 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RFX3P48380 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.49■□□□□ 0.71
RFX3P48380 TERF1P2-201ENST00000583350 1212 ntBASIC19.49■□□□□ 0.71
RFX3P48380 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RFX3P48380 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RFX3P48380 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.49■□□□□ 0.71
RFX3P48380 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.49■□□□□ 0.71
RFX3P48380 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RFX3P48380 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RFX3P48380 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RFX3P48380 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.49■□□□□ 0.71
RFX3P48380 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.49■□□□□ 0.71
RFX3P48380 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RFX3P48380 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RFX3P48380 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RFX3P48380 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX3P48380 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.48■□□□□ 0.71
RFX3P48380 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX3P48380 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.48■□□□□ 0.71
RFX3P48380 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX3P48380 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
RFX3P48380 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.48■□□□□ 0.71
RFX3P48380 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.48■□□□□ 0.71
RFX3P48380 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX3P48380 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX3P48380 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.48■□□□□ 0.71
RFX3P48380 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX3P48380 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
RFX3P48380 FEM1AP4-201ENST00000443167 1987 ntBASIC19.48■□□□□ 0.71
RFX3P48380 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RFX3P48380 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
RFX3P48380 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RFX3P48380 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
RFX3P48380 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
RFX3P48380 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RFX3P48380 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
RFX3P48380 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RFX3P48380 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RFX3P48380 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RFX3P48380 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RFX3P48380 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RFX3P48380 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.47■□□□□ 0.71
RFX3P48380 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RFX3P48380 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
RFX3P48380 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
RFX3P48380 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
RFX3P48380 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.47■□□□□ 0.71
RFX3P48380 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms