Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH2P43246 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.14■□□□□ 0.97
MSH2P43246 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH2P43246 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MSH2P43246 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.13■□□□□ 0.97
MSH2P43246 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.13■□□□□ 0.97
MSH2P43246 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.13■□□□□ 0.97
MSH2P43246 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.13■□□□□ 0.97
MSH2P43246 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH2P43246 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.13■□□□□ 0.97
MSH2P43246 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.13■□□□□ 0.97
MSH2P43246 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH2P43246 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.13■□□□□ 0.97
MSH2P43246 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MSH2P43246 AP005212.1-201ENST00000581547 1997 ntBASIC21.13■□□□□ 0.97
MSH2P43246 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH2P43246 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.13■□□□□ 0.97
MSH2P43246 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
MSH2P43246 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
MSH2P43246 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH2P43246 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH2P43246 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.12■□□□□ 0.97
MSH2P43246 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.12■□□□□ 0.97
MSH2P43246 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
MSH2P43246 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.12■□□□□ 0.97
MSH2P43246 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
MSH2P43246 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH2P43246 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
MSH2P43246 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.12■□□□□ 0.97
MSH2P43246 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH2P43246 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.12■□□□□ 0.97
MSH2P43246 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.12■□□□□ 0.97
MSH2P43246 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH2P43246 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.12■□□□□ 0.97
MSH2P43246 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.12■□□□□ 0.97
MSH2P43246 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.12■□□□□ 0.97
MSH2P43246 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.12■□□□□ 0.97
MSH2P43246 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
MSH2P43246 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH2P43246 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH2P43246 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH2P43246 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
MSH2P43246 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.12■□□□□ 0.97
MSH2P43246 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH2P43246 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH2P43246 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
MSH2P43246 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.11■□□□□ 0.97
MSH2P43246 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH2P43246 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.11■□□□□ 0.97
MSH2P43246 AC073314.1-201ENST00000568729 2216 ntBASIC21.11■□□□□ 0.97
MSH2P43246 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH2P43246 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH2P43246 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
MSH2P43246 AC011298.3-201ENST00000615796 283 ntBASIC21.11■□□□□ 0.97
MSH2P43246 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH2P43246 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.11■□□□□ 0.97
MSH2P43246 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21.11■□□□□ 0.97
MSH2P43246 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH2P43246 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
MSH2P43246 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH2P43246 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.11■□□□□ 0.97
MSH2P43246 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MSH2P43246 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH2P43246 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
MSH2P43246 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH2P43246 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH2P43246 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH2P43246 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH2P43246 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
MSH2P43246 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSH2P43246 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH2P43246 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH2P43246 AL136116.3-201ENST00000402907 1138 ntBASIC21.1■□□□□ 0.97
MSH2P43246 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH2P43246 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH2P43246 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH2P43246 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH2P43246 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH2P43246 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.1■□□□□ 0.97
MSH2P43246 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.1■□□□□ 0.97
MSH2P43246 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH2P43246 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH2P43246 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH2P43246 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
MSH2P43246 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH2P43246 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.09■□□□□ 0.97
MSH2P43246 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSH2P43246 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.09■□□□□ 0.97
MSH2P43246 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH2P43246 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSH2P43246 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
MSH2P43246 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.08■□□□□ 0.97
MSH2P43246 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.97
MSH2P43246 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.08■□□□□ 0.97
MSH2P43246 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.08■□□□□ 0.97
MSH2P43246 AC121338.2-201ENST00000622535 1744 ntBASIC21.08■□□□□ 0.97
MSH2P43246 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
MSH2P43246 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.08■□□□□ 0.96
MSH2P43246 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.96
MSH2P43246 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms