Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.03■□□□□ 0.96
RPA3P35244 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
RPA3P35244 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.03■□□□□ 0.96
RPA3P35244 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RPA3P35244 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
RPA3P35244 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
RPA3P35244 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
RPA3P35244 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RPA3P35244 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
RPA3P35244 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RPA3P35244 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RPA3P35244 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RPA3P35244 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.02■□□□□ 0.96
RPA3P35244 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.02■□□□□ 0.96
RPA3P35244 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
RPA3P35244 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RPA3P35244 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.02■□□□□ 0.96
RPA3P35244 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RPA3P35244 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.02■□□□□ 0.96
RPA3P35244 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.02■□□□□ 0.96
RPA3P35244 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.02■□□□□ 0.96
RPA3P35244 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RPA3P35244 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RPA3P35244 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RPA3P35244 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
RPA3P35244 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RPA3P35244 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
RPA3P35244 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
RPA3P35244 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RPA3P35244 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
RPA3P35244 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
RPA3P35244 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RPA3P35244 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.01■□□□□ 0.95
RPA3P35244 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPA3P35244 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.01■□□□□ 0.95
RPA3P35244 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPA3P35244 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
RPA3P35244 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.01■□□□□ 0.95
RPA3P35244 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.01■□□□□ 0.95
RPA3P35244 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.01■□□□□ 0.95
RPA3P35244 AC105265.2-201ENST00000467189 838 ntBASIC21.01■□□□□ 0.95
RPA3P35244 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RPA3P35244 AFG3L1P-217ENST00000557444 2447 ntBASIC21.01■□□□□ 0.95
RPA3P35244 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPA3P35244 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPA3P35244 AP004607.7-201ENST00000527152 1677 ntBASIC21.01■□□□□ 0.95
RPA3P35244 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPA3P35244 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPA3P35244 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPA3P35244 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPA3P35244 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPA3P35244 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPA3P35244 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPA3P35244 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.01■□□□□ 0.95
RPA3P35244 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RPA3P35244 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.01■□□□□ 0.95
RPA3P35244 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPA3P35244 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21■□□□□ 0.95
RPA3P35244 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21■□□□□ 0.95
RPA3P35244 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RPA3P35244 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RPA3P35244 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RPA3P35244 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21■□□□□ 0.95
RPA3P35244 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RPA3P35244 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21■□□□□ 0.95
RPA3P35244 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21■□□□□ 0.95
RPA3P35244 AL034346.1-201ENST00000568244 1277 ntBASIC21■□□□□ 0.95
RPA3P35244 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21■□□□□ 0.95
RPA3P35244 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21■□□□□ 0.95
RPA3P35244 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
RPA3P35244 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21■□□□□ 0.95
RPA3P35244 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21■□□□□ 0.95
RPA3P35244 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RPA3P35244 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21■□□□□ 0.95
RPA3P35244 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RPA3P35244 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.99■□□□□ 0.95
RPA3P35244 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
RPA3P35244 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.99■□□□□ 0.95
RPA3P35244 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.99■□□□□ 0.95
RPA3P35244 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RPA3P35244 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RPA3P35244 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
RPA3P35244 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RPA3P35244 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.99■□□□□ 0.95
RPA3P35244 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.99■□□□□ 0.95
RPA3P35244 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.99■□□□□ 0.95
RPA3P35244 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.99■□□□□ 0.95
RPA3P35244 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RPA3P35244 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
RPA3P35244 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RPA3P35244 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
RPA3P35244 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RPA3P35244 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RPA3P35244 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RPA3P35244 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.98■□□□□ 0.95
RPA3P35244 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RPA3P35244 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.98■□□□□ 0.95
RPA3P35244 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RPA3P35244 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
RPA3P35244 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms