Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A1P20908 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A1P20908 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.18■□□□□ 0.82
COL5A1P20908 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.18■□□□□ 0.82
COL5A1P20908 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.18■□□□□ 0.82
COL5A1P20908 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.18■□□□□ 0.82
COL5A1P20908 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A1P20908 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.18■□□□□ 0.82
COL5A1P20908 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A1P20908 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A1P20908 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.18■□□□□ 0.82
COL5A1P20908 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.18■□□□□ 0.82
COL5A1P20908 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.18■□□□□ 0.82
COL5A1P20908 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
COL5A1P20908 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.18■□□□□ 0.82
COL5A1P20908 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A1P20908 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A1P20908 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.18■□□□□ 0.82
COL5A1P20908 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A1P20908 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
COL5A1P20908 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.18■□□□□ 0.82
COL5A1P20908 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL5A1P20908 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.18■□□□□ 0.82
COL5A1P20908 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL5A1P20908 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL5A1P20908 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL5A1P20908 AC012618.2-201ENST00000428058 849 ntBASIC20.17■□□□□ 0.82
COL5A1P20908 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.17■□□□□ 0.82
COL5A1P20908 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL5A1P20908 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL5A1P20908 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL5A1P20908 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.16■□□□□ 0.82
COL5A1P20908 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A1P20908 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.16■□□□□ 0.82
COL5A1P20908 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A1P20908 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A1P20908 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A1P20908 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.16■□□□□ 0.82
COL5A1P20908 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A1P20908 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.16■□□□□ 0.82
COL5A1P20908 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.16■□□□□ 0.82
COL5A1P20908 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.16■□□□□ 0.82
COL5A1P20908 AC073912.3-201ENST00000624414 853 ntBASIC20.16■□□□□ 0.82
COL5A1P20908 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.16■□□□□ 0.82
COL5A1P20908 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A1P20908 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A1P20908 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A1P20908 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A1P20908 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A1P20908 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A1P20908 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A1P20908 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A1P20908 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
COL5A1P20908 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.16■□□□□ 0.82
COL5A1P20908 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
COL5A1P20908 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.16■□□□□ 0.82
COL5A1P20908 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.16■□□□□ 0.82
COL5A1P20908 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.15■□□□□ 0.82
COL5A1P20908 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL5A1P20908 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.15■□□□□ 0.82
COL5A1P20908 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.15■□□□□ 0.82
COL5A1P20908 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
COL5A1P20908 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
COL5A1P20908 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL5A1P20908 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.15■□□□□ 0.82
COL5A1P20908 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.15■□□□□ 0.82
COL5A1P20908 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.15■□□□□ 0.82
COL5A1P20908 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL5A1P20908 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL5A1P20908 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL5A1P20908 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
COL5A1P20908 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL5A1P20908 POM121L13P-201ENST00000422362 380 ntBASIC20.14■□□□□ 0.81
COL5A1P20908 AC233263.1-201ENST00000578059 224 ntBASIC20.14■□□□□ 0.81
COL5A1P20908 AC105020.6-201ENST00000621523 1217 ntBASIC20.14■□□□□ 0.81
COL5A1P20908 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL5A1P20908 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL5A1P20908 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.14■□□□□ 0.81
COL5A1P20908 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL5A1P20908 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL5A1P20908 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL5A1P20908 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
COL5A1P20908 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A1P20908 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.13■□□□□ 0.81
COL5A1P20908 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A1P20908 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A1P20908 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.13■□□□□ 0.81
COL5A1P20908 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.13■□□□□ 0.81
COL5A1P20908 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A1P20908 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.13■□□□□ 0.81
COL5A1P20908 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.13■□□□□ 0.81
COL5A1P20908 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A1P20908 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.13■□□□□ 0.81
COL5A1P20908 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.13■□□□□ 0.81
COL5A1P20908 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A1P20908 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.13■□□□□ 0.81
COL5A1P20908 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A1P20908 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A1P20908 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A1P20908 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms