Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MSH3P20585 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
MSH3P20585 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH3P20585 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
MSH3P20585 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
MSH3P20585 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.74■□□□□ 0.91
MSH3P20585 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.74■□□□□ 0.91
MSH3P20585 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.74■□□□□ 0.91
MSH3P20585 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.74■□□□□ 0.91
MSH3P20585 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.74■□□□□ 0.91
MSH3P20585 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MSH3P20585 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
MSH3P20585 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.74■□□□□ 0.91
MSH3P20585 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH3P20585 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.73■□□□□ 0.91
MSH3P20585 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH3P20585 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
MSH3P20585 KRT16P2-201ENST00000414673 1423 ntBASIC20.73■□□□□ 0.91
MSH3P20585 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.73■□□□□ 0.91
MSH3P20585 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH3P20585 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH3P20585 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.73■□□□□ 0.91
MSH3P20585 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
MSH3P20585 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH3P20585 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MSH3P20585 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.73■□□□□ 0.91
MSH3P20585 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MSH3P20585 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MSH3P20585 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.73■□□□□ 0.91
MSH3P20585 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.73■□□□□ 0.91
MSH3P20585 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MSH3P20585 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MSH3P20585 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
MSH3P20585 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.73■□□□□ 0.91
MSH3P20585 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.73■□□□□ 0.91
MSH3P20585 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
MSH3P20585 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH3P20585 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH3P20585 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH3P20585 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
MSH3P20585 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH3P20585 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MSH3P20585 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MSH3P20585 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH3P20585 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH3P20585 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.72■□□□□ 0.91
MSH3P20585 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
MSH3P20585 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MSH3P20585 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
MSH3P20585 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MSH3P20585 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH3P20585 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH3P20585 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.72■□□□□ 0.91
MSH3P20585 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH3P20585 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MSH3P20585 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH3P20585 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
MSH3P20585 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.71■□□□□ 0.91
MSH3P20585 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH3P20585 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH3P20585 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH3P20585 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH3P20585 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.71■□□□□ 0.91
MSH3P20585 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
MSH3P20585 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
MSH3P20585 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.71■□□□□ 0.91
MSH3P20585 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
MSH3P20585 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.71■□□□□ 0.91
MSH3P20585 IKBKGP1-201ENST00000612193 1073 ntBASIC20.71■□□□□ 0.91
MSH3P20585 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.71■□□□□ 0.91
MSH3P20585 MYCNOS-205ENST00000641950 531 ntBASIC20.71■□□□□ 0.91
MSH3P20585 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH3P20585 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH3P20585 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH3P20585 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH3P20585 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSH3P20585 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
MSH3P20585 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSH3P20585 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSH3P20585 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.7■□□□□ 0.9
MSH3P20585 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.7■□□□□ 0.9
MSH3P20585 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
MSH3P20585 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSH3P20585 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.7■□□□□ 0.9
MSH3P20585 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.7■□□□□ 0.9
MSH3P20585 AC006015.1-201ENST00000429970 570 ntBASIC20.7■□□□□ 0.9
MSH3P20585 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.7■□□□□ 0.9
MSH3P20585 AL137784.2-201ENST00000607332 1000 ntBASIC20.7■□□□□ 0.9
MSH3P20585 AC092666.2-201ENST00000613287 246 ntBASIC20.7■□□□□ 0.9
MSH3P20585 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.7■□□□□ 0.9
MSH3P20585 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSH3P20585 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.7■□□□□ 0.9
MSH3P20585 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
MSH3P20585 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSH3P20585 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.7■□□□□ 0.9
MSH3P20585 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSH3P20585 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH3P20585 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
MSH3P20585 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH3P20585 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms