Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.89■□□□□ 0.94
VIMP08670 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
VIMP08670 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
VIMP08670 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VIMP08670 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VIMP08670 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.89■□□□□ 0.93
VIMP08670 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
VIMP08670 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VIMP08670 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.89■□□□□ 0.93
VIMP08670 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VIMP08670 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VIMP08670 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VIMP08670 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VIMP08670 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.89■□□□□ 0.93
VIMP08670 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.89■□□□□ 0.93
VIMP08670 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VIMP08670 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VIMP08670 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
VIMP08670 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VIMP08670 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VIMP08670 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
VIMP08670 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VIMP08670 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VIMP08670 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VIMP08670 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VIMP08670 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
VIMP08670 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.88■□□□□ 0.93
VIMP08670 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.88■□□□□ 0.93
VIMP08670 AC010980.1-201ENST00000587192 1142 ntBASIC20.88■□□□□ 0.93
VIMP08670 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.88■□□□□ 0.93
VIMP08670 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
VIMP08670 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VIMP08670 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VIMP08670 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
VIMP08670 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
VIMP08670 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
VIMP08670 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VIMP08670 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VIMP08670 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
VIMP08670 AC003102.1-202ENST00000563394 1796 ntBASIC20.87■□□□□ 0.93
VIMP08670 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VIMP08670 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.87■□□□□ 0.93
VIMP08670 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VIMP08670 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VIMP08670 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VIMP08670 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VIMP08670 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.87■□□□□ 0.93
VIMP08670 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VIMP08670 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.87■□□□□ 0.93
VIMP08670 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
VIMP08670 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.87■□□□□ 0.93
VIMP08670 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VIMP08670 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VIMP08670 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VIMP08670 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
VIMP08670 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
VIMP08670 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.87■□□□□ 0.93
VIMP08670 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VIMP08670 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.87■□□□□ 0.93
VIMP08670 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
VIMP08670 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VIMP08670 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VIMP08670 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VIMP08670 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.86■□□□□ 0.93
VIMP08670 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VIMP08670 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
VIMP08670 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
VIMP08670 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.86■□□□□ 0.93
VIMP08670 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.86■□□□□ 0.93
VIMP08670 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VIMP08670 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.86■□□□□ 0.93
VIMP08670 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
VIMP08670 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
VIMP08670 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VIMP08670 SMG8-203ENST00000578922 2178 ntBASIC20.86■□□□□ 0.93
VIMP08670 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
VIMP08670 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VIMP08670 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
VIMP08670 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
VIMP08670 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.85■□□□□ 0.93
VIMP08670 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VIMP08670 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VIMP08670 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VIMP08670 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VIMP08670 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.85■□□□□ 0.93
VIMP08670 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VIMP08670 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
VIMP08670 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.85■□□□□ 0.93
VIMP08670 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
VIMP08670 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VIMP08670 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VIMP08670 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.85■□□□□ 0.93
VIMP08670 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VIMP08670 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VIMP08670 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.84■□□□□ 0.93
VIMP08670 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
VIMP08670 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VIMP08670 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VIMP08670 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.84■□□□□ 0.93
VIMP08670 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms