Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.42■□□□□ 0.86
TNFP01375 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TNFP01375 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
TNFP01375 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TNFP01375 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TNFP01375 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TNFP01375 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TNFP01375 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.41■□□□□ 0.86
TNFP01375 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
TNFP01375 AC097658.1-201ENST00000475555 843 ntBASIC20.41■□□□□ 0.86
TNFP01375 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
TNFP01375 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
TNFP01375 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TNFP01375 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
TNFP01375 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TNFP01375 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TNFP01375 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.41■□□□□ 0.86
TNFP01375 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.41■□□□□ 0.86
TNFP01375 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TNFP01375 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TNFP01375 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TNFP01375 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TNFP01375 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
TNFP01375 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TNFP01375 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
TNFP01375 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.4■□□□□ 0.86
TNFP01375 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.4■□□□□ 0.86
TNFP01375 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
TNFP01375 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
TNFP01375 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TNFP01375 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.39■□□□□ 0.86
TNFP01375 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TNFP01375 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.39■□□□□ 0.86
TNFP01375 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
TNFP01375 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TNFP01375 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TNFP01375 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TNFP01375 LSM12P1-201ENST00000411836 588 ntBASIC20.39■□□□□ 0.85
TNFP01375 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.39■□□□□ 0.85
TNFP01375 AC007322.3-201ENST00000426526 701 ntBASIC20.39■□□□□ 0.85
TNFP01375 TSPY20P-201ENST00000450910 630 ntBASIC20.39■□□□□ 0.85
TNFP01375 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.39■□□□□ 0.85
TNFP01375 AC100791.3-201ENST00000617619 330 ntBASIC20.39■□□□□ 0.85
TNFP01375 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.39■□□□□ 0.85
TNFP01375 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TNFP01375 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.39■□□□□ 0.85
TNFP01375 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFP01375 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFP01375 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFP01375 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TNFP01375 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFP01375 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFP01375 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.38■□□□□ 0.85
TNFP01375 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.38■□□□□ 0.85
TNFP01375 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
TNFP01375 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFP01375 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFP01375 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.38■□□□□ 0.85
TNFP01375 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.38■□□□□ 0.85
TNFP01375 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
TNFP01375 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.38■□□□□ 0.85
TNFP01375 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.38■□□□□ 0.85
TNFP01375 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.38■□□□□ 0.85
TNFP01375 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFP01375 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFP01375 TMEM191A-211ENST00000637163 1067 ntBASIC20.38■□□□□ 0.85
TNFP01375 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.38■□□□□ 0.85
TNFP01375 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TNFP01375 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
TNFP01375 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFP01375 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFP01375 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFP01375 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFP01375 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.37■□□□□ 0.85
TNFP01375 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.37■□□□□ 0.85
TNFP01375 AC091874.3-201ENST00000512672 1195 ntBASIC20.37■□□□□ 0.85
TNFP01375 RNA5SP413-201ENST00000516373 109 ntBASIC20.37■□□□□ 0.85
TNFP01375 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.37■□□□□ 0.85
TNFP01375 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TNFP01375 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.37■□□□□ 0.85
TNFP01375 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFP01375 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TNFP01375 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFP01375 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.37■□□□□ 0.85
TNFP01375 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TNFP01375 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TNFP01375 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TNFP01375 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TNFP01375 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TNFP01375 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
TNFP01375 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TNFP01375 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TNFP01375 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.36■□□□□ 0.85
TNFP01375 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TNFP01375 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TNFP01375 AL355472.2-201ENST00000422958 438 ntBASIC20.36■□□□□ 0.85
TNFP01375 DUSP5P2-201ENST00000426873 1033 ntBASIC20.36■□□□□ 0.85
TNFP01375 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.36■□□□□ 0.85
TNFP01375 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TNFP01375 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms