Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AL512625.2-201ENST00000417533 625 ntBASIC26.47■■□□□ 1.83
CACNA1FO60840 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC26.47■■□□□ 1.83
CACNA1FO60840 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC26.47■■□□□ 1.83
CACNA1FO60840 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC26.47■■□□□ 1.83
CACNA1FO60840 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC26.47■■□□□ 1.83
CACNA1FO60840 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CACNA1FO60840 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CACNA1FO60840 MKRN4P-201ENST00000444706 1521 ntBASIC26.47■■□□□ 1.83
CACNA1FO60840 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
CACNA1FO60840 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CACNA1FO60840 PHB2-213ENST00000546111 858 ntTSL 2 BASIC26.47■■□□□ 1.83
CACNA1FO60840 EMC9-206ENST00000560403 872 ntTSL 2 BASIC26.47■■□□□ 1.83
CACNA1FO60840 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
CACNA1FO60840 AC069236.1-201ENST00000604339 616 ntBASIC26.47■■□□□ 1.83
CACNA1FO60840 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC26.47■■□□□ 1.83
CACNA1FO60840 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CACNA1FO60840 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
CACNA1FO60840 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CACNA1FO60840 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC26.46■■□□□ 1.83
CACNA1FO60840 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CACNA1FO60840 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
CACNA1FO60840 GXYLT1P5-201ENST00000614548 1189 ntBASIC26.46■■□□□ 1.83
CACNA1FO60840 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CACNA1FO60840 FEM1AP4-201ENST00000443167 1987 ntBASIC26.46■■□□□ 1.83
CACNA1FO60840 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CACNA1FO60840 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CACNA1FO60840 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.83
CACNA1FO60840 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC26.46■■□□□ 1.83
CACNA1FO60840 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
CACNA1FO60840 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
CACNA1FO60840 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
CACNA1FO60840 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CACNA1FO60840 MAP2K4P1-201ENST00000438453 1195 ntBASIC26.45■■□□□ 1.82
CACNA1FO60840 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC26.45■■□□□ 1.82
CACNA1FO60840 AC098934.4-201ENST00000564127 592 ntBASIC26.45■■□□□ 1.82
CACNA1FO60840 FAM21FP-204ENST00000608637 956 ntBASIC26.45■■□□□ 1.82
CACNA1FO60840 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
CACNA1FO60840 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC26.45■■□□□ 1.82
CACNA1FO60840 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC26.45■■□□□ 1.82
CACNA1FO60840 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC26.45■■□□□ 1.82
CACNA1FO60840 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CACNA1FO60840 SLC29A4P1-201ENST00000398760 971 ntBASIC26.44■■□□□ 1.82
CACNA1FO60840 AL591742.1-201ENST00000604433 565 ntBASIC26.44■■□□□ 1.82
CACNA1FO60840 AL024507.2-201ENST00000606070 2574 ntBASIC26.44■■□□□ 1.82
CACNA1FO60840 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CACNA1FO60840 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CACNA1FO60840 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC26.44■■□□□ 1.82
CACNA1FO60840 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CACNA1FO60840 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CACNA1FO60840 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC26.44■■□□□ 1.82
CACNA1FO60840 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC26.44■■□□□ 1.82
CACNA1FO60840 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
CACNA1FO60840 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC26.44■■□□□ 1.82
CACNA1FO60840 PBX1-209ENST00000485769 834 ntTSL 2 BASIC26.44■■□□□ 1.82
CACNA1FO60840 AC142086.2-201ENST00000569753 217 ntBASIC26.44■■□□□ 1.82
CACNA1FO60840 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC26.44■■□□□ 1.82
CACNA1FO60840 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
CACNA1FO60840 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CACNA1FO60840 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC26.43■■□□□ 1.82
CACNA1FO60840 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CACNA1FO60840 GPX1P1-201ENST00000388829 606 ntBASIC26.43■■□□□ 1.82
CACNA1FO60840 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC26.43■■□□□ 1.82
CACNA1FO60840 AL121832.2-201ENST00000610979 668 ntBASIC26.43■■□□□ 1.82
CACNA1FO60840 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CACNA1FO60840 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
CACNA1FO60840 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC26.43■■□□□ 1.82
CACNA1FO60840 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC26.43■■□□□ 1.82
CACNA1FO60840 AC010980.2-201ENST00000587099 1412 ntBASIC26.43■■□□□ 1.82
CACNA1FO60840 PALM-207ENST00000590161 2137 ntTSL 4 BASIC26.42■■□□□ 1.82
CACNA1FO60840 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CACNA1FO60840 ISCU-212ENST00000547005 795 ntTSL 3 BASIC26.42■■□□□ 1.82
CACNA1FO60840 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CACNA1FO60840 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC26.42■■□□□ 1.82
CACNA1FO60840 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC26.42■■□□□ 1.82
CACNA1FO60840 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC26.42■■□□□ 1.82
CACNA1FO60840 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CACNA1FO60840 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CACNA1FO60840 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC26.42■■□□□ 1.82
CACNA1FO60840 CDV3P1-201ENST00000471403 739 ntBASIC26.42■■□□□ 1.82
CACNA1FO60840 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CACNA1FO60840 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CACNA1FO60840 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CACNA1FO60840 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CACNA1FO60840 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC26.41■■□□□ 1.82
CACNA1FO60840 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC26.41■■□□□ 1.82
CACNA1FO60840 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC26.41■■□□□ 1.82
CACNA1FO60840 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CACNA1FO60840 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CACNA1FO60840 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CACNA1FO60840 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC26.41■■□□□ 1.82
CACNA1FO60840 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CACNA1FO60840 HLA-L-209ENST00000420110 1011 ntBASIC26.4■■□□□ 1.82
CACNA1FO60840 AL356652.1-201ENST00000615962 565 ntBASIC26.4■■□□□ 1.82
CACNA1FO60840 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
CACNA1FO60840 AC026310.3-201ENST00000625186 2373 ntBASIC26.4■■□□□ 1.82
CACNA1FO60840 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC26.4■■□□□ 1.82
CACNA1FO60840 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CACNA1FO60840 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC26.4■■□□□ 1.82
CACNA1FO60840 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC26.4■■□□□ 1.82
CACNA1FO60840 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms