Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1BO60663 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
LMX1BO60663 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LMX1BO60663 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.3■□□□□ 0.52
LMX1BO60663 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.3■□□□□ 0.52
LMX1BO60663 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.3■□□□□ 0.52
LMX1BO60663 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1BO60663 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
LMX1BO60663 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1BO60663 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.29■□□□□ 0.52
LMX1BO60663 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.29■□□□□ 0.52
LMX1BO60663 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
LMX1BO60663 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.29■□□□□ 0.52
LMX1BO60663 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1BO60663 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.29■□□□□ 0.52
LMX1BO60663 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1BO60663 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1BO60663 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LMX1BO60663 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1BO60663 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.28■□□□□ 0.52
LMX1BO60663 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.28■□□□□ 0.52
LMX1BO60663 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1BO60663 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.28■□□□□ 0.52
LMX1BO60663 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1BO60663 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1BO60663 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1BO60663 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1BO60663 LINC01006-201ENST00000333319 2292 ntBASIC18.28■□□□□ 0.52
LMX1BO60663 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1BO60663 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1BO60663 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1BO60663 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1BO60663 HLA-L-209ENST00000420110 1011 ntBASIC18.28■□□□□ 0.52
LMX1BO60663 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.28■□□□□ 0.52
LMX1BO60663 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18.28■□□□□ 0.52
LMX1BO60663 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.28■□□□□ 0.52
LMX1BO60663 AC105233.4-201ENST00000642045 216 ntBASIC18.28■□□□□ 0.52
LMX1BO60663 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.28■□□□□ 0.52
LMX1BO60663 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1BO60663 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1BO60663 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1BO60663 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LMX1BO60663 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1BO60663 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.27■□□□□ 0.52
LMX1BO60663 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1BO60663 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.27■□□□□ 0.52
LMX1BO60663 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.27■□□□□ 0.52
LMX1BO60663 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1BO60663 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
LMX1BO60663 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1BO60663 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.27■□□□□ 0.52
LMX1BO60663 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1BO60663 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
LMX1BO60663 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.27■□□□□ 0.52
LMX1BO60663 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.27■□□□□ 0.52
LMX1BO60663 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.27■□□□□ 0.52
LMX1BO60663 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1BO60663 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LMX1BO60663 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.27■□□□□ 0.51
LMX1BO60663 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
LMX1BO60663 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
LMX1BO60663 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
LMX1BO60663 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1BO60663 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.26■□□□□ 0.51
LMX1BO60663 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1BO60663 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1BO60663 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1BO60663 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.26■□□□□ 0.51
LMX1BO60663 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1BO60663 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1BO60663 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1BO60663 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1BO60663 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1BO60663 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
LMX1BO60663 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1BO60663 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.26■□□□□ 0.51
LMX1BO60663 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.26■□□□□ 0.51
LMX1BO60663 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.26■□□□□ 0.51
LMX1BO60663 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1BO60663 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1BO60663 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
LMX1BO60663 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1BO60663 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1BO60663 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
LMX1BO60663 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.26■□□□□ 0.51
LMX1BO60663 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LMX1BO60663 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.25■□□□□ 0.51
LMX1BO60663 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1BO60663 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1BO60663 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.25■□□□□ 0.51
LMX1BO60663 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1BO60663 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.25■□□□□ 0.51
LMX1BO60663 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
LMX1BO60663 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1BO60663 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1BO60663 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1BO60663 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
LMX1BO60663 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1BO60663 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.25■□□□□ 0.51
LMX1BO60663 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 186.3 ms