Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC23.53■■□□□ 1.36
MSH4O15457 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC23.53■■□□□ 1.36
MSH4O15457 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
MSH4O15457 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.53■■□□□ 1.36
MSH4O15457 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
MSH4O15457 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
MSH4O15457 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
MSH4O15457 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
MSH4O15457 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC23.52■■□□□ 1.36
MSH4O15457 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC23.52■■□□□ 1.36
MSH4O15457 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
MSH4O15457 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
MSH4O15457 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
MSH4O15457 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC23.52■■□□□ 1.36
MSH4O15457 MAP2K4P1-201ENST00000438453 1195 ntBASIC23.52■■□□□ 1.36
MSH4O15457 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
MSH4O15457 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
MSH4O15457 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
MSH4O15457 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
MSH4O15457 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.52■■□□□ 1.36
MSH4O15457 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
MSH4O15457 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.35
MSH4O15457 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
MSH4O15457 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
MSH4O15457 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
MSH4O15457 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
MSH4O15457 AC006970.2-201ENST00000450065 779 ntBASIC23.51■■□□□ 1.35
MSH4O15457 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH4O15457 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH4O15457 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH4O15457 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH4O15457 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC23.51■■□□□ 1.35
MSH4O15457 GXYLT1P5-201ENST00000614548 1189 ntBASIC23.51■■□□□ 1.35
MSH4O15457 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
MSH4O15457 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC23.51■■□□□ 1.35
MSH4O15457 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
MSH4O15457 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC23.51■■□□□ 1.35
MSH4O15457 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
MSH4O15457 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH4O15457 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC23.5■■□□□ 1.35
MSH4O15457 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH4O15457 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
MSH4O15457 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH4O15457 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC23.5■■□□□ 1.35
MSH4O15457 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC23.5■■□□□ 1.35
MSH4O15457 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH4O15457 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
MSH4O15457 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
MSH4O15457 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
MSH4O15457 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
MSH4O15457 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
MSH4O15457 AL024507.2-201ENST00000606070 2574 ntBASIC23.49■■□□□ 1.35
MSH4O15457 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH4O15457 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC23.49■■□□□ 1.35
MSH4O15457 PARN-205ENST00000539279 1557 ntTSL 2 BASIC23.49■■□□□ 1.35
MSH4O15457 CYP2T1P-201ENST00000432607 1285 ntBASIC23.49■■□□□ 1.35
MSH4O15457 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC23.49■■□□□ 1.35
MSH4O15457 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH4O15457 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
MSH4O15457 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
MSH4O15457 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH4O15457 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
MSH4O15457 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH4O15457 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC23.48■■□□□ 1.35
MSH4O15457 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC23.48■■□□□ 1.35
MSH4O15457 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC23.48■■□□□ 1.35
MSH4O15457 NCF1B-203ENST00000435988 1254 ntBASIC23.48■■□□□ 1.35
MSH4O15457 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
MSH4O15457 AL591742.1-201ENST00000604433 565 ntBASIC23.48■■□□□ 1.35
MSH4O15457 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
MSH4O15457 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH4O15457 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
MSH4O15457 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
MSH4O15457 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
MSH4O15457 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC23.47■■□□□ 1.35
MSH4O15457 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC23.47■■□□□ 1.35
MSH4O15457 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC23.47■■□□□ 1.35
MSH4O15457 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
MSH4O15457 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
MSH4O15457 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
MSH4O15457 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
MSH4O15457 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
MSH4O15457 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
MSH4O15457 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
MSH4O15457 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC23.46■■□□□ 1.35
MSH4O15457 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC23.46■■□□□ 1.35
MSH4O15457 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
MSH4O15457 AC016405.3-201ENST00000607710 860 ntBASIC23.46■■□□□ 1.35
MSH4O15457 WT1-AS_3.1-201ENST00000613262 234 ntBASIC23.46■■□□□ 1.35
MSH4O15457 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.46■■□□□ 1.35
MSH4O15457 AC026310.3-201ENST00000625186 2373 ntBASIC23.45■■□□□ 1.35
MSH4O15457 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
MSH4O15457 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
MSH4O15457 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
MSH4O15457 FEM1AP4-201ENST00000443167 1987 ntBASIC23.45■■□□□ 1.35
MSH4O15457 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
MSH4O15457 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.45■■□□□ 1.34
MSH4O15457 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC23.45■■□□□ 1.34
MSH4O15457 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.34
MSH4O15457 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC23.45■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms