Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC3O15379 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC3O15379 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
HDAC3O15379 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.27■□□□□ 0.84
HDAC3O15379 AC007952.6-201ENST00000573168 2673 ntBASIC20.27■□□□□ 0.84
HDAC3O15379 AC003957.1-201ENST00000625108 2673 ntBASIC20.27■□□□□ 0.84
HDAC3O15379 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
HDAC3O15379 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.27■□□□□ 0.84
HDAC3O15379 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC3O15379 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.27■□□□□ 0.84
HDAC3O15379 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.27■□□□□ 0.84
HDAC3O15379 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC3O15379 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.27■□□□□ 0.84
HDAC3O15379 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC3O15379 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC3O15379 PCDHAC2-203ENST00000615316 3011 ntBASIC20.27■□□□□ 0.84
HDAC3O15379 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC3O15379 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC3O15379 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC3O15379 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC3O15379 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC3O15379 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
HDAC3O15379 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
HDAC3O15379 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.26■□□□□ 0.83
HDAC3O15379 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.26■□□□□ 0.83
HDAC3O15379 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.26■□□□□ 0.83
HDAC3O15379 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
HDAC3O15379 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC3O15379 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.26■□□□□ 0.83
HDAC3O15379 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
HDAC3O15379 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC3O15379 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC3O15379 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC3O15379 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC3O15379 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC3O15379 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC3O15379 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.26■□□□□ 0.83
HDAC3O15379 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC3O15379 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC3O15379 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC3O15379 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC3O15379 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.26■□□□□ 0.83
HDAC3O15379 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
HDAC3O15379 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC3O15379 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC3O15379 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
HDAC3O15379 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC3O15379 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.25■□□□□ 0.83
HDAC3O15379 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC3O15379 AFG3L1P-217ENST00000557444 2447 ntBASIC20.25■□□□□ 0.83
HDAC3O15379 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.25■□□□□ 0.83
HDAC3O15379 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC3O15379 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.25■□□□□ 0.83
HDAC3O15379 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.25■□□□□ 0.83
HDAC3O15379 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.25■□□□□ 0.83
HDAC3O15379 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.25■□□□□ 0.83
HDAC3O15379 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC3O15379 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.25■□□□□ 0.83
HDAC3O15379 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
HDAC3O15379 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
HDAC3O15379 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.24■□□□□ 0.83
HDAC3O15379 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC3O15379 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.24■□□□□ 0.83
HDAC3O15379 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.24■□□□□ 0.83
HDAC3O15379 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC3O15379 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC3O15379 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC3O15379 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
HDAC3O15379 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.24■□□□□ 0.83
HDAC3O15379 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.24■□□□□ 0.83
HDAC3O15379 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
HDAC3O15379 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC3O15379 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.24■□□□□ 0.83
HDAC3O15379 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC3O15379 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.24■□□□□ 0.83
HDAC3O15379 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC3O15379 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC3O15379 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
HDAC3O15379 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC3O15379 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HDAC3O15379 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
HDAC3O15379 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC3O15379 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
HDAC3O15379 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC3O15379 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
HDAC3O15379 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC3O15379 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC3O15379 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC3O15379 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.23■□□□□ 0.83
HDAC3O15379 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
HDAC3O15379 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
HDAC3O15379 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.23■□□□□ 0.83
HDAC3O15379 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC3O15379 AC133561.4-201ENST00000566112 224 ntBASIC20.23■□□□□ 0.83
HDAC3O15379 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.23■□□□□ 0.83
HDAC3O15379 MIR4466-201ENST00000606121 54 ntBASIC20.23■□□□□ 0.83
HDAC3O15379 AL162377.1-201ENST00000618844 1793 ntBASIC20.23■□□□□ 0.83
HDAC3O15379 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC3O15379 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HDAC3O15379 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms