Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.68■□□□□ 0.42
SDCBPO00560 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDCBPO00560 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDCBPO00560 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDCBPO00560 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDCBPO00560 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC17.68■□□□□ 0.42
SDCBPO00560 AP004607.7-201ENST00000527152 1677 ntBASIC17.67■□□□□ 0.42
SDCBPO00560 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDCBPO00560 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDCBPO00560 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDCBPO00560 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
SDCBPO00560 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDCBPO00560 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDCBPO00560 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDCBPO00560 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC17.67■□□□□ 0.42
SDCBPO00560 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC17.67■□□□□ 0.42
SDCBPO00560 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC17.67■□□□□ 0.42
SDCBPO00560 GRAMD4P4-201ENST00000613563 1115 ntBASIC17.67■□□□□ 0.42
SDCBPO00560 AC106739.1-201ENST00000617035 715 ntBASIC17.67■□□□□ 0.42
SDCBPO00560 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDCBPO00560 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDCBPO00560 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
SDCBPO00560 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDCBPO00560 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SDCBPO00560 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDCBPO00560 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC17.67■□□□□ 0.42
SDCBPO00560 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDCBPO00560 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC17.66■□□□□ 0.42
SDCBPO00560 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDCBPO00560 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC17.66■□□□□ 0.42
SDCBPO00560 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDCBPO00560 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SDCBPO00560 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDCBPO00560 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC17.66■□□□□ 0.42
SDCBPO00560 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC17.66■□□□□ 0.42
SDCBPO00560 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC17.66■□□□□ 0.42
SDCBPO00560 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC17.66■□□□□ 0.42
SDCBPO00560 AC027682.1-201ENST00000562846 899 ntBASIC17.66■□□□□ 0.42
SDCBPO00560 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SDCBPO00560 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC17.66■□□□□ 0.42
SDCBPO00560 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC17.66■□□□□ 0.42
SDCBPO00560 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.66■□□□□ 0.42
SDCBPO00560 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDCBPO00560 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDCBPO00560 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDCBPO00560 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SDCBPO00560 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDCBPO00560 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SDCBPO00560 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDCBPO00560 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDCBPO00560 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDCBPO00560 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDCBPO00560 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.65■□□□□ 0.42
SDCBPO00560 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.65■□□□□ 0.42
SDCBPO00560 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC17.65■□□□□ 0.42
SDCBPO00560 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC17.65■□□□□ 0.42
SDCBPO00560 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDCBPO00560 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
SDCBPO00560 AC099791.1-201ENST00000416440 715 ntBASIC17.65■□□□□ 0.42
SDCBPO00560 GRAMD4P2-201ENST00000423297 1097 ntBASIC17.65■□□□□ 0.42
SDCBPO00560 NALT1-201ENST00000429224 738 ntTSL 5 BASIC17.65■□□□□ 0.42
SDCBPO00560 IGHV3-19-201ENST00000521488 291 ntBASIC17.65■□□□□ 0.42
SDCBPO00560 AICDA-202ENST00000537228 667 ntTSL 5 BASIC17.65■□□□□ 0.42
SDCBPO00560 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
SDCBPO00560 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SDCBPO00560 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDCBPO00560 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDCBPO00560 AC073314.1-201ENST00000568729 2216 ntBASIC17.65■□□□□ 0.42
SDCBPO00560 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SDCBPO00560 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.65■□□□□ 0.42
SDCBPO00560 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDCBPO00560 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC17.65■□□□□ 0.42
SDCBPO00560 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SDCBPO00560 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC17.64■□□□□ 0.41
SDCBPO00560 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDCBPO00560 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SDCBPO00560 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
SDCBPO00560 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
SDCBPO00560 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
SDCBPO00560 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC17.64■□□□□ 0.41
SDCBPO00560 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SDCBPO00560 AC110285.6-201ENST00000617652 491 ntBASIC17.64■□□□□ 0.41
SDCBPO00560 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SDCBPO00560 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC17.64■□□□□ 0.41
SDCBPO00560 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.64■□□□□ 0.41
SDCBPO00560 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDCBPO00560 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.64■□□□□ 0.41
SDCBPO00560 AC006128.1-201ENST00000624704 1661 ntBASIC17.64■□□□□ 0.41
SDCBPO00560 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDCBPO00560 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDCBPO00560 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC17.63■□□□□ 0.41
SDCBPO00560 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC17.63■□□□□ 0.41
SDCBPO00560 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDCBPO00560 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDCBPO00560 EDA-201ENST00000338901 1233 ntBASIC17.63■□□□□ 0.41
SDCBPO00560 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDCBPO00560 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC17.63■□□□□ 0.41
SDCBPO00560 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC17.63■□□□□ 0.41
SDCBPO00560 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDCBPO00560 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms