Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LRRC53A6NM62 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
LRRC53A6NM62 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
LRRC53A6NM62 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC53A6NM62 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC22.48■■□□□ 1.19
LRRC53A6NM62 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC53A6NM62 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC53A6NM62 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC53A6NM62 GABARAPL3-202ENST00000624044 1851 ntBASIC22.48■■□□□ 1.19
LRRC53A6NM62 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC53A6NM62 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC53A6NM62 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC53A6NM62 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC22.48■■□□□ 1.19
LRRC53A6NM62 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC22.48■■□□□ 1.19
LRRC53A6NM62 AL136967.2-201ENST00000623968 743 ntBASIC22.48■■□□□ 1.19
LRRC53A6NM62 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC53A6NM62 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
LRRC53A6NM62 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC22.48■■□□□ 1.19
LRRC53A6NM62 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
LRRC53A6NM62 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC22.48■■□□□ 1.19
LRRC53A6NM62 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRRC53A6NM62 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRRC53A6NM62 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRRC53A6NM62 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRRC53A6NM62 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC22.47■■□□□ 1.19
LRRC53A6NM62 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRRC53A6NM62 AC012414.1-201ENST00000556676 535 ntBASIC22.47■■□□□ 1.19
LRRC53A6NM62 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRRC53A6NM62 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
LRRC53A6NM62 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRRC53A6NM62 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRRC53A6NM62 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
LRRC53A6NM62 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC22.47■■□□□ 1.19
LRRC53A6NM62 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC22.47■■□□□ 1.19
LRRC53A6NM62 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
LRRC53A6NM62 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
LRRC53A6NM62 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC22.46■■□□□ 1.19
LRRC53A6NM62 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
LRRC53A6NM62 EBPL-204ENST00000378272 766 ntTSL 3 BASIC22.46■■□□□ 1.19
LRRC53A6NM62 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC22.46■■□□□ 1.19
LRRC53A6NM62 EEF1DP3-203ENST00000566025 782 ntBASIC22.46■■□□□ 1.19
LRRC53A6NM62 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
LRRC53A6NM62 MPST-204ENST00000404393 1329 ntTSL 5 BASIC22.46■■□□□ 1.19
LRRC53A6NM62 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC22.46■■□□□ 1.19
LRRC53A6NM62 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC22.46■■□□□ 1.19
LRRC53A6NM62 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC22.46■■□□□ 1.19
LRRC53A6NM62 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
LRRC53A6NM62 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
LRRC53A6NM62 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC22.45■■□□□ 1.19
LRRC53A6NM62 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
LRRC53A6NM62 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.18
LRRC53A6NM62 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
LRRC53A6NM62 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC22.45■■□□□ 1.18
LRRC53A6NM62 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
LRRC53A6NM62 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
LRRC53A6NM62 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
LRRC53A6NM62 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
LRRC53A6NM62 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.18
LRRC53A6NM62 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
LRRC53A6NM62 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
LRRC53A6NM62 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LRRC53A6NM62 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LRRC53A6NM62 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LRRC53A6NM62 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LRRC53A6NM62 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC22.44■■□□□ 1.18
LRRC53A6NM62 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LRRC53A6NM62 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
LRRC53A6NM62 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC22.44■■□□□ 1.18
LRRC53A6NM62 NALT1-201ENST00000429224 738 ntTSL 5 BASIC22.44■■□□□ 1.18
LRRC53A6NM62 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC22.44■■□□□ 1.18
LRRC53A6NM62 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
LRRC53A6NM62 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
LRRC53A6NM62 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
LRRC53A6NM62 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
LRRC53A6NM62 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
LRRC53A6NM62 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
LRRC53A6NM62 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
LRRC53A6NM62 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC22.43■■□□□ 1.18
LRRC53A6NM62 AC027702.1-201ENST00000563810 1770 ntBASIC22.43■■□□□ 1.18
LRRC53A6NM62 AC061975.6-201ENST00000579045 1553 ntBASIC22.43■■□□□ 1.18
LRRC53A6NM62 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC22.43■■□□□ 1.18
LRRC53A6NM62 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC22.43■■□□□ 1.18
LRRC53A6NM62 AC053503.5-201ENST00000601508 636 ntBASIC22.43■■□□□ 1.18
LRRC53A6NM62 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
LRRC53A6NM62 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
LRRC53A6NM62 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
LRRC53A6NM62 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
LRRC53A6NM62 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
LRRC53A6NM62 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
LRRC53A6NM62 MFF-207ENST00000409565 1548 ntTSL 2 BASIC22.42■■□□□ 1.18
LRRC53A6NM62 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
LRRC53A6NM62 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
LRRC53A6NM62 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
LRRC53A6NM62 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
LRRC53A6NM62 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC22.42■■□□□ 1.18
LRRC53A6NM62 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
LRRC53A6NM62 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
LRRC53A6NM62 SUDS3P1-201ENST00000505831 966 ntBASIC22.42■■□□□ 1.18
LRRC53A6NM62 TPRG1LP1-201ENST00000598702 760 ntBASIC22.42■■□□□ 1.18
LRRC53A6NM62 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC22.42■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms