Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.14■□□□□ 0.49
TRAV1-2A0A0B4J238 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV1-2A0A0B4J238 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV1-2A0A0B4J238 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV1-2A0A0B4J238 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV1-2A0A0B4J238 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
TRAV1-2A0A0B4J238 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC18.14■□□□□ 0.49
TRAV1-2A0A0B4J238 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.14■□□□□ 0.49
TRAV1-2A0A0B4J238 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV1-2A0A0B4J238 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV1-2A0A0B4J238 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV1-2A0A0B4J238 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV1-2A0A0B4J238 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV1-2A0A0B4J238 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 AC239859.2-201ENST00000444165 318 ntBASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 AP005435.1-201ENST00000529293 1178 ntBASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 AC099778.1-201ENST00000568593 1911 ntBASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV1-2A0A0B4J238 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV1-2A0A0B4J238 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV1-2A0A0B4J238 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.12■□□□□ 0.49
TRAV1-2A0A0B4J238 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
TRAV1-2A0A0B4J238 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV1-2A0A0B4J238 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.12■□□□□ 0.49
TRAV1-2A0A0B4J238 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV1-2A0A0B4J238 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV1-2A0A0B4J238 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.12■□□□□ 0.49
TRAV1-2A0A0B4J238 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV1-2A0A0B4J238 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV1-2A0A0B4J238 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.12■□□□□ 0.49
TRAV1-2A0A0B4J238 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV1-2A0A0B4J238 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV1-2A0A0B4J238 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
TRAV1-2A0A0B4J238 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 AC112907.3-201ENST00000577781 2400 ntBASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAV1-2A0A0B4J238 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 FP700111.2-201ENST00000619190 1892 ntBASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 AC092171.4-201ENST00000609130 632 ntBASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 SMG8-203ENST00000578922 2178 ntBASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV1-2A0A0B4J238 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV1-2A0A0B4J238 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms