Protein–RNA interactions for Protein: Q9Y4C1

KDM3A, Lysine-specific demethylase 3A, humanhuman

Predictions only

Length 1,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3AQ9Y4C1 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
KDM3AQ9Y4C1 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
KDM3AQ9Y4C1 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC23.6■■□□□ 1.37
KDM3AQ9Y4C1 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC23.6■■□□□ 1.37
KDM3AQ9Y4C1 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC23.6■■□□□ 1.37
KDM3AQ9Y4C1 AP001160.3-201ENST00000601484 763 ntBASIC23.6■■□□□ 1.37
KDM3AQ9Y4C1 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
KDM3AQ9Y4C1 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
KDM3AQ9Y4C1 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
KDM3AQ9Y4C1 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
KDM3AQ9Y4C1 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC23.6■■□□□ 1.37
KDM3AQ9Y4C1 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
KDM3AQ9Y4C1 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
KDM3AQ9Y4C1 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
KDM3AQ9Y4C1 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
KDM3AQ9Y4C1 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 UBE2DNL-204ENST00000602536 740 ntBASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 MIR663A-201ENST00000385250 93 ntBASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 AC010141.2-201ENST00000452426 721 ntBASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 DUX4L16-201ENST00000555130 1264 ntBASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 AC008175.2-201ENST00000612840 297 ntBASIC23.59■■□□□ 1.37
KDM3AQ9Y4C1 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
KDM3AQ9Y4C1 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC23.58■■□□□ 1.37
KDM3AQ9Y4C1 AC026310.3-201ENST00000625186 2373 ntBASIC23.58■■□□□ 1.37
KDM3AQ9Y4C1 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
KDM3AQ9Y4C1 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
KDM3AQ9Y4C1 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.36
KDM3AQ9Y4C1 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.36
KDM3AQ9Y4C1 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC23.58■■□□□ 1.36
KDM3AQ9Y4C1 PARP1-202ENST00000366792 553 ntTSL 3 BASIC23.58■■□□□ 1.36
KDM3AQ9Y4C1 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.36
KDM3AQ9Y4C1 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC23.58■■□□□ 1.36
KDM3AQ9Y4C1 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC23.58■■□□□ 1.36
KDM3AQ9Y4C1 AC231657.2-201ENST00000624556 255 ntBASIC23.58■■□□□ 1.36
KDM3AQ9Y4C1 MYCNOS-205ENST00000641950 531 ntBASIC23.58■■□□□ 1.36
KDM3AQ9Y4C1 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC23.58■■□□□ 1.36
KDM3AQ9Y4C1 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 DYM-203ENST00000442713 2147 ntTSL 2 BASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 POU5F1P4-201ENST00000413175 1085 ntBASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 KRT18P20-201ENST00000548986 1279 ntBASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC23.57■■□□□ 1.36
KDM3AQ9Y4C1 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
KDM3AQ9Y4C1 PARN-205ENST00000539279 1557 ntTSL 2 BASIC23.56■■□□□ 1.36
KDM3AQ9Y4C1 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
KDM3AQ9Y4C1 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC23.56■■□□□ 1.36
KDM3AQ9Y4C1 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC23.56■■□□□ 1.36
KDM3AQ9Y4C1 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
KDM3AQ9Y4C1 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
KDM3AQ9Y4C1 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
KDM3AQ9Y4C1 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
KDM3AQ9Y4C1 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
KDM3AQ9Y4C1 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC23.56■■□□□ 1.36
KDM3AQ9Y4C1 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
KDM3AQ9Y4C1 AL109923.1-201ENST00000618799 583 ntBASIC23.56■■□□□ 1.36
KDM3AQ9Y4C1 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC23.56■■□□□ 1.36
KDM3AQ9Y4C1 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
KDM3AQ9Y4C1 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
KDM3AQ9Y4C1 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
KDM3AQ9Y4C1 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
KDM3AQ9Y4C1 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
KDM3AQ9Y4C1 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
KDM3AQ9Y4C1 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
KDM3AQ9Y4C1 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.54■■□□□ 1.36
KDM3AQ9Y4C1 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
KDM3AQ9Y4C1 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC23.54■■□□□ 1.36
KDM3AQ9Y4C1 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
KDM3AQ9Y4C1 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
KDM3AQ9Y4C1 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
KDM3AQ9Y4C1 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
KDM3AQ9Y4C1 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC23.54■■□□□ 1.36
KDM3AQ9Y4C1 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
KDM3AQ9Y4C1 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
KDM3AQ9Y4C1 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC23.54■■□□□ 1.36
KDM3AQ9Y4C1 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
KDM3AQ9Y4C1 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms