Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC16.88■□□□□ 0.29
FOXA2Q9Y261 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXA2Q9Y261 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
FOXA2Q9Y261 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 STX5-203ENST00000394690 1568 ntTSL 5 BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 JTB-203ENST00000368589 1216 ntTSL 2 BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 AC027612.3-201ENST00000413684 1047 ntBASIC16.87■□□□□ 0.29
FOXA2Q9Y261 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 ASL-203ENST00000380839 1765 ntTSL 5 BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 AC009237.3-201ENST00000393279 1427 ntBASIC16.87■□□□□ 0.29
FOXA2Q9Y261 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
FOXA2Q9Y261 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 SLC25A24-204ENST00000569674 2357 ntBASIC16.86■□□□□ 0.29
FOXA2Q9Y261 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA2Q9Y261 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA2Q9Y261 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC16.85■□□□□ 0.29
FOXA2Q9Y261 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
FOXA2Q9Y261 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA2Q9Y261 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC16.85■□□□□ 0.29
FOXA2Q9Y261 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA2Q9Y261 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA2Q9Y261 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC16.85■□□□□ 0.29
FOXA2Q9Y261 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA2Q9Y261 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
FOXA2Q9Y261 PALM-207ENST00000590161 2137 ntTSL 4 BASIC16.85■□□□□ 0.29
FOXA2Q9Y261 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA2Q9Y261 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA2Q9Y261 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA2Q9Y261 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA2Q9Y261 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 YBX1P1-201ENST00000445822 960 ntBASIC16.84■□□□□ 0.29
FOXA2Q9Y261 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 SP2-202ENST00000613139 908 ntTSL 5 BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA2Q9Y261 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms