Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
AP4E1Q9UPM8 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
AP4E1Q9UPM8 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.7■■□□□ 1.06
AP4E1Q9UPM8 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
AP4E1Q9UPM8 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
AP4E1Q9UPM8 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
AP4E1Q9UPM8 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
AP4E1Q9UPM8 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
AP4E1Q9UPM8 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
AP4E1Q9UPM8 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
AP4E1Q9UPM8 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
AP4E1Q9UPM8 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
AP4E1Q9UPM8 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
AP4E1Q9UPM8 KRT19P1-201ENST00000405746 1186 ntBASIC21.68■■□□□ 1.06
AP4E1Q9UPM8 NTF6G-201ENST00000591094 616 ntBASIC21.68■■□□□ 1.06
AP4E1Q9UPM8 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
AP4E1Q9UPM8 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
AP4E1Q9UPM8 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
AP4E1Q9UPM8 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.68■■□□□ 1.06
AP4E1Q9UPM8 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
AP4E1Q9UPM8 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 KRT16P2-201ENST00000414673 1423 ntBASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 AC120498.10-201ENST00000621827 505 ntBASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
AP4E1Q9UPM8 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
AP4E1Q9UPM8 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
AP4E1Q9UPM8 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.66■■□□□ 1.06
AP4E1Q9UPM8 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
AP4E1Q9UPM8 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.66■■□□□ 1.06
AP4E1Q9UPM8 SLC7A5P2-201ENST00000553010 536 ntBASIC21.66■■□□□ 1.06
AP4E1Q9UPM8 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
AP4E1Q9UPM8 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
AP4E1Q9UPM8 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
AP4E1Q9UPM8 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
AP4E1Q9UPM8 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
AP4E1Q9UPM8 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.65■■□□□ 1.06
AP4E1Q9UPM8 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
AP4E1Q9UPM8 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
AP4E1Q9UPM8 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.65■■□□□ 1.06
AP4E1Q9UPM8 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
AP4E1Q9UPM8 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
AP4E1Q9UPM8 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
AP4E1Q9UPM8 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
AP4E1Q9UPM8 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
AP4E1Q9UPM8 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
AP4E1Q9UPM8 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
AP4E1Q9UPM8 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.64■■□□□ 1.06
AP4E1Q9UPM8 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
AP4E1Q9UPM8 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
AP4E1Q9UPM8 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 KRT18P20-201ENST00000548986 1279 ntBASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
AP4E1Q9UPM8 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
AP4E1Q9UPM8 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
AP4E1Q9UPM8 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms