Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC24■■□□□ 1.43
DDX41Q9UJV9 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC24■■□□□ 1.43
DDX41Q9UJV9 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC24■■□□□ 1.43
DDX41Q9UJV9 AC010536.3-201ENST00000620306 533 ntBASIC24■■□□□ 1.43
DDX41Q9UJV9 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC24■■□□□ 1.43
DDX41Q9UJV9 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC24■■□□□ 1.43
DDX41Q9UJV9 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC23.99■■□□□ 1.43
DDX41Q9UJV9 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.99■■□□□ 1.43
DDX41Q9UJV9 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
DDX41Q9UJV9 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
DDX41Q9UJV9 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
DDX41Q9UJV9 SLC7A5P2-201ENST00000553010 536 ntBASIC23.99■■□□□ 1.43
DDX41Q9UJV9 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC23.99■■□□□ 1.43
DDX41Q9UJV9 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
DDX41Q9UJV9 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
DDX41Q9UJV9 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
DDX41Q9UJV9 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC23.99■■□□□ 1.43
DDX41Q9UJV9 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
DDX41Q9UJV9 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
DDX41Q9UJV9 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
DDX41Q9UJV9 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
DDX41Q9UJV9 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 METTL15-202ENST00000403099 795 ntTSL 5 BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
DDX41Q9UJV9 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
DDX41Q9UJV9 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
DDX41Q9UJV9 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
DDX41Q9UJV9 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
DDX41Q9UJV9 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
DDX41Q9UJV9 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
DDX41Q9UJV9 UQCRFS1P1-201ENST00000435169 820 ntBASIC23.97■■□□□ 1.43
DDX41Q9UJV9 GUSBP6-202ENST00000438529 1198 ntBASIC23.97■■□□□ 1.43
DDX41Q9UJV9 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
DDX41Q9UJV9 TSPY6P-201ENST00000448518 926 ntBASIC23.97■■□□□ 1.43
DDX41Q9UJV9 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
DDX41Q9UJV9 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
DDX41Q9UJV9 OAS3-207ENST00000551007 998 ntTSL 2 BASIC23.97■■□□□ 1.43
DDX41Q9UJV9 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC23.97■■□□□ 1.43
DDX41Q9UJV9 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
DDX41Q9UJV9 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
DDX41Q9UJV9 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
DDX41Q9UJV9 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC23.96■■□□□ 1.43
DDX41Q9UJV9 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC23.96■■□□□ 1.43
DDX41Q9UJV9 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC23.96■■□□□ 1.43
DDX41Q9UJV9 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC23.96■■□□□ 1.43
DDX41Q9UJV9 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
DDX41Q9UJV9 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
DDX41Q9UJV9 AC142086.2-201ENST00000569753 217 ntBASIC23.96■■□□□ 1.43
DDX41Q9UJV9 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC23.96■■□□□ 1.43
DDX41Q9UJV9 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC23.96■■□□□ 1.43
DDX41Q9UJV9 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
DDX41Q9UJV9 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
DDX41Q9UJV9 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
DDX41Q9UJV9 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
DDX41Q9UJV9 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
DDX41Q9UJV9 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC23.95■■□□□ 1.43
DDX41Q9UJV9 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC23.95■■□□□ 1.42
DDX41Q9UJV9 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
DDX41Q9UJV9 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC23.95■■□□□ 1.42
DDX41Q9UJV9 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC23.95■■□□□ 1.42
DDX41Q9UJV9 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
DDX41Q9UJV9 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
DDX41Q9UJV9 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
DDX41Q9UJV9 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
DDX41Q9UJV9 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
DDX41Q9UJV9 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
DDX41Q9UJV9 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
DDX41Q9UJV9 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
DDX41Q9UJV9 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
DDX41Q9UJV9 RNF146-206ENST00000480444 843 ntTSL 2 BASIC23.94■■□□□ 1.42
DDX41Q9UJV9 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC23.94■■□□□ 1.42
DDX41Q9UJV9 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC23.94■■□□□ 1.42
DDX41Q9UJV9 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
DDX41Q9UJV9 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
DDX41Q9UJV9 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
DDX41Q9UJV9 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
DDX41Q9UJV9 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC23.93■■□□□ 1.42
DDX41Q9UJV9 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC23.93■■□□□ 1.42
DDX41Q9UJV9 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
DDX41Q9UJV9 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms