Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 AL391422.3-201ENST00000603791 2761 ntBASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 HES6-206ENST00000409574 738 ntTSL 2 BASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC17.9■□□□□ 0.46
CHMP1AQ9HD42 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
CHMP1AQ9HD42 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC17.89■□□□□ 0.46
CHMP1AQ9HD42 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHMP1AQ9HD42 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 LINC01006-201ENST00000333319 2292 ntBASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 AP004607.7-201ENST00000527152 1677 ntBASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 QDPR-206ENST00000508623 601 ntTSL 3 BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 DUX4L19-201ENST00000557448 1267 ntBASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 AL512631.2-201ENST00000604634 923 ntBASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHMP1AQ9HD42 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP1AQ9HD42 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.87■□□□□ 0.45
CHMP1AQ9HD42 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP1AQ9HD42 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP1AQ9HD42 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
CHMP1AQ9HD42 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.87■□□□□ 0.45
CHMP1AQ9HD42 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC17.87■□□□□ 0.45
CHMP1AQ9HD42 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CHMP1AQ9HD42 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP1AQ9HD42 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP1AQ9HD42 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP1AQ9HD42 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP1AQ9HD42 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP1AQ9HD42 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP1AQ9HD42 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP1AQ9HD42 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 SERBP1P1-201ENST00000396021 1160 ntBASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 RPP21-222ENST00000433076 577 ntTSL 2 BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 TRIR-202ENST00000588213 841 ntTSL 3 BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 AL138724.1-201ENST00000606771 1088 ntBASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP1AQ9HD42 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP1AQ9HD42 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms