Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC28BQ9BUN5 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC28BQ9BUN5 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC28BQ9BUN5 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCDC28BQ9BUN5 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC28BQ9BUN5 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.3■□□□□ 0.84
CCDC28BQ9BUN5 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC28BQ9BUN5 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC28BQ9BUN5 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC28BQ9BUN5 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC28BQ9BUN5 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC28BQ9BUN5 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
CCDC28BQ9BUN5 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC28BQ9BUN5 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC28BQ9BUN5 KRT16P3-201ENST00000439127 1283 ntBASIC20.29■□□□□ 0.84
CCDC28BQ9BUN5 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC28BQ9BUN5 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC28BQ9BUN5 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC28BQ9BUN5 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CCDC28BQ9BUN5 AC027702.1-201ENST00000563810 1770 ntBASIC20.29■□□□□ 0.84
CCDC28BQ9BUN5 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 SRD5A1P1-201ENST00000442297 786 ntBASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 RARRES2P1-201ENST00000474487 481 ntBASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CCDC28BQ9BUN5 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC28BQ9BUN5 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC28BQ9BUN5 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
CCDC28BQ9BUN5 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC28BQ9BUN5 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC28BQ9BUN5 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
CCDC28BQ9BUN5 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC28BQ9BUN5 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC28BQ9BUN5 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC28BQ9BUN5 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC28BQ9BUN5 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC28BQ9BUN5 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC28BQ9BUN5 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC28BQ9BUN5 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.27■□□□□ 0.83
CCDC28BQ9BUN5 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
CCDC28BQ9BUN5 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC28BQ9BUN5 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 AC020907.5-201ENST00000624372 1936 ntBASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 MIR3621-201ENST00000580529 85 ntBASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 AL138724.1-201ENST00000606771 1088 ntBASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
CCDC28BQ9BUN5 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 AC007225.1-201ENST00000566331 1836 ntBASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC28BQ9BUN5 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC28BQ9BUN5 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CCDC28BQ9BUN5 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC28BQ9BUN5 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC28BQ9BUN5 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC28BQ9BUN5 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC28BQ9BUN5 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CCDC28BQ9BUN5 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CCDC28BQ9BUN5 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms