Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
VPS35Q96QK1 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
VPS35Q96QK1 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
VPS35Q96QK1 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.77■□□□□ 0.91
VPS35Q96QK1 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
VPS35Q96QK1 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
VPS35Q96QK1 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS35Q96QK1 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS35Q96QK1 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS35Q96QK1 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS35Q96QK1 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS35Q96QK1 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
VPS35Q96QK1 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
VPS35Q96QK1 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS35Q96QK1 MFSD11-216ENST00000590393 1141 ntBASIC20.76■□□□□ 0.91
VPS35Q96QK1 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS35Q96QK1 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS35Q96QK1 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS35Q96QK1 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS35Q96QK1 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
VPS35Q96QK1 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS35Q96QK1 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS35Q96QK1 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS35Q96QK1 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS35Q96QK1 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS35Q96QK1 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS35Q96QK1 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS35Q96QK1 AC004911.1-201ENST00000416316 871 ntBASIC20.75■□□□□ 0.91
VPS35Q96QK1 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS35Q96QK1 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS35Q96QK1 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS35Q96QK1 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS35Q96QK1 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS35Q96QK1 Z98882.1-201ENST00000622160 2253 ntBASIC20.75■□□□□ 0.91
VPS35Q96QK1 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS35Q96QK1 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
VPS35Q96QK1 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VPS35Q96QK1 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VPS35Q96QK1 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.74■□□□□ 0.91
VPS35Q96QK1 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS35Q96QK1 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS35Q96QK1 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
VPS35Q96QK1 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.74■□□□□ 0.91
VPS35Q96QK1 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS35Q96QK1 AC011767.1-201ENST00000617410 1153 ntBASIC20.74■□□□□ 0.91
VPS35Q96QK1 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VPS35Q96QK1 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.74■□□□□ 0.91
VPS35Q96QK1 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.74■□□□□ 0.91
VPS35Q96QK1 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.73■□□□□ 0.91
VPS35Q96QK1 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS35Q96QK1 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS35Q96QK1 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.73■□□□□ 0.91
VPS35Q96QK1 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS35Q96QK1 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS35Q96QK1 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS35Q96QK1 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS35Q96QK1 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS35Q96QK1 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS35Q96QK1 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.73■□□□□ 0.91
VPS35Q96QK1 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS35Q96QK1 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.73■□□□□ 0.91
VPS35Q96QK1 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.73■□□□□ 0.91
VPS35Q96QK1 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS35Q96QK1 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS35Q96QK1 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS35Q96QK1 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS35Q96QK1 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS35Q96QK1 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS35Q96QK1 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS35Q96QK1 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS35Q96QK1 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS35Q96QK1 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS35Q96QK1 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
VPS35Q96QK1 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS35Q96QK1 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS35Q96QK1 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS35Q96QK1 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.72■□□□□ 0.91
VPS35Q96QK1 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
VPS35Q96QK1 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS35Q96QK1 AC243732.1-201ENST00000612648 864 ntBASIC20.72■□□□□ 0.91
VPS35Q96QK1 AC010536.3-201ENST00000620306 533 ntBASIC20.72■□□□□ 0.91
VPS35Q96QK1 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS35Q96QK1 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS35Q96QK1 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS35Q96QK1 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS35Q96QK1 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS35Q96QK1 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS35Q96QK1 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS35Q96QK1 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS35Q96QK1 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.71■□□□□ 0.91
VPS35Q96QK1 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS35Q96QK1 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.71■□□□□ 0.91
VPS35Q96QK1 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS35Q96QK1 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS35Q96QK1 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS35Q96QK1 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS35Q96QK1 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS35Q96QK1 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS35Q96QK1 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS35Q96QK1 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms