Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
HMGB4Q8WW32 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 FAM21FP-204ENST00000608637 956 ntBASIC21.01■□□□□ 0.95
HMGB4Q8WW32 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 AC026471.6-201ENST00000622954 1905 ntBASIC21.01■□□□□ 0.95
HMGB4Q8WW32 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 C11orf96-202ENST00000528572 1834 ntBASIC21.01■□□□□ 0.95
HMGB4Q8WW32 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGB4Q8WW32 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
HMGB4Q8WW32 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGB4Q8WW32 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGB4Q8WW32 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
HMGB4Q8WW32 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21■□□□□ 0.95
HMGB4Q8WW32 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGB4Q8WW32 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGB4Q8WW32 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21■□□□□ 0.95
HMGB4Q8WW32 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21■□□□□ 0.95
HMGB4Q8WW32 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21■□□□□ 0.95
HMGB4Q8WW32 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21■□□□□ 0.95
HMGB4Q8WW32 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGB4Q8WW32 AC073648.6-201ENST00000641589 218 ntBASIC21■□□□□ 0.95
HMGB4Q8WW32 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21■□□□□ 0.95
HMGB4Q8WW32 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21■□□□□ 0.95
HMGB4Q8WW32 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGB4Q8WW32 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.99■□□□□ 0.95
HMGB4Q8WW32 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB4Q8WW32 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB4Q8WW32 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB4Q8WW32 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.99■□□□□ 0.95
HMGB4Q8WW32 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGB4Q8WW32 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.99■□□□□ 0.95
HMGB4Q8WW32 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGB4Q8WW32 CYP2T3P-201ENST00000601990 817 ntBASIC20.99■□□□□ 0.95
HMGB4Q8WW32 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.99■□□□□ 0.95
HMGB4Q8WW32 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB4Q8WW32 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB4Q8WW32 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGB4Q8WW32 AC080038.3-201ENST00000623346 1952 ntBASIC20.99■□□□□ 0.95
HMGB4Q8WW32 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HMGB4Q8WW32 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
HMGB4Q8WW32 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB4Q8WW32 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.98■□□□□ 0.95
HMGB4Q8WW32 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB4Q8WW32 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB4Q8WW32 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.98■□□□□ 0.95
HMGB4Q8WW32 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
HMGB4Q8WW32 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.98■□□□□ 0.95
HMGB4Q8WW32 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.98■□□□□ 0.95
HMGB4Q8WW32 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.98■□□□□ 0.95
HMGB4Q8WW32 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.98■□□□□ 0.95
HMGB4Q8WW32 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
HMGB4Q8WW32 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HMGB4Q8WW32 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.97■□□□□ 0.95
HMGB4Q8WW32 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB4Q8WW32 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB4Q8WW32 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
HMGB4Q8WW32 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.97■□□□□ 0.95
HMGB4Q8WW32 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.97■□□□□ 0.95
HMGB4Q8WW32 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
HMGB4Q8WW32 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.97■□□□□ 0.95
HMGB4Q8WW32 AC010542.4-201ENST00000563151 1910 ntBASIC20.97■□□□□ 0.95
HMGB4Q8WW32 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.97■□□□□ 0.95
HMGB4Q8WW32 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.97■□□□□ 0.95
HMGB4Q8WW32 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB4Q8WW32 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB4Q8WW32 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB4Q8WW32 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGB4Q8WW32 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB4Q8WW32 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB4Q8WW32 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB4Q8WW32 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB4Q8WW32 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.96■□□□□ 0.95
HMGB4Q8WW32 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB4Q8WW32 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB4Q8WW32 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB4Q8WW32 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.96■□□□□ 0.95
HMGB4Q8WW32 UNC93B4-201ENST00000505679 747 ntBASIC20.96■□□□□ 0.95
HMGB4Q8WW32 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.96■□□□□ 0.95
HMGB4Q8WW32 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB4Q8WW32 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.96■□□□□ 0.95
HMGB4Q8WW32 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.96■□□□□ 0.95
HMGB4Q8WW32 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGB4Q8WW32 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms