Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.37■■□□□ 1.01
SHROOM3Q8TF72 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.37■■□□□ 1.01
SHROOM3Q8TF72 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHROOM3Q8TF72 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.37■■□□□ 1.01
SHROOM3Q8TF72 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHROOM3Q8TF72 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHROOM3Q8TF72 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.36■■□□□ 1.01
SHROOM3Q8TF72 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM3Q8TF72 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM3Q8TF72 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.36■■□□□ 1.01
SHROOM3Q8TF72 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.36■■□□□ 1.01
SHROOM3Q8TF72 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM3Q8TF72 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM3Q8TF72 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.36■■□□□ 1.01
SHROOM3Q8TF72 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM3Q8TF72 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.36■■□□□ 1.01
SHROOM3Q8TF72 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.36■■□□□ 1.01
SHROOM3Q8TF72 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.36■■□□□ 1.01
SHROOM3Q8TF72 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM3Q8TF72 MYCNOS-205ENST00000641950 531 ntBASIC21.36■■□□□ 1.01
SHROOM3Q8TF72 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.35■■□□□ 1.01
SHROOM3Q8TF72 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHROOM3Q8TF72 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHROOM3Q8TF72 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHROOM3Q8TF72 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHROOM3Q8TF72 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.35■■□□□ 1.01
SHROOM3Q8TF72 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SHROOM3Q8TF72 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.35■■□□□ 1.01
SHROOM3Q8TF72 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.35■■□□□ 1.01
SHROOM3Q8TF72 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SHROOM3Q8TF72 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHROOM3Q8TF72 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHROOM3Q8TF72 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.35■■□□□ 1.01
SHROOM3Q8TF72 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHROOM3Q8TF72 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHROOM3Q8TF72 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHROOM3Q8TF72 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SHROOM3Q8TF72 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.34■■□□□ 1.01
SHROOM3Q8TF72 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SHROOM3Q8TF72 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.34■■□□□ 1.01
SHROOM3Q8TF72 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.34■■□□□ 1.01
SHROOM3Q8TF72 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.34■■□□□ 1.01
SHROOM3Q8TF72 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
SHROOM3Q8TF72 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.34■■□□□ 1.01
SHROOM3Q8TF72 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.34■■□□□ 1.01
SHROOM3Q8TF72 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SHROOM3Q8TF72 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.34■■□□□ 1.01
SHROOM3Q8TF72 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.34■■□□□ 1.01
SHROOM3Q8TF72 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.33■■□□□ 1.01
SHROOM3Q8TF72 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SHROOM3Q8TF72 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.33■■□□□ 1.01
SHROOM3Q8TF72 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.33■■□□□ 1.01
SHROOM3Q8TF72 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
SHROOM3Q8TF72 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.33■■□□□ 1.01
SHROOM3Q8TF72 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SHROOM3Q8TF72 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.33■■□□□ 1.01
SHROOM3Q8TF72 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.33■■□□□ 1.01
SHROOM3Q8TF72 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
SHROOM3Q8TF72 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SHROOM3Q8TF72 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.33■■□□□ 1
SHROOM3Q8TF72 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SHROOM3Q8TF72 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.32■■□□□ 1
SHROOM3Q8TF72 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.32■■□□□ 1
SHROOM3Q8TF72 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.32■■□□□ 1
SHROOM3Q8TF72 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.32■■□□□ 1
SHROOM3Q8TF72 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
SHROOM3Q8TF72 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.32■■□□□ 1
SHROOM3Q8TF72 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.32■■□□□ 1
SHROOM3Q8TF72 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
SHROOM3Q8TF72 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.32■■□□□ 1
SHROOM3Q8TF72 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.32■■□□□ 1
SHROOM3Q8TF72 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SHROOM3Q8TF72 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.32■■□□□ 1
SHROOM3Q8TF72 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.32■■□□□ 1
SHROOM3Q8TF72 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.32■■□□□ 1
SHROOM3Q8TF72 LINC02228-203ENST00000641970 1355 ntBASIC21.32■■□□□ 1
SHROOM3Q8TF72 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
SHROOM3Q8TF72 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.32■■□□□ 1
SHROOM3Q8TF72 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.32■■□□□ 1
SHROOM3Q8TF72 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.32■■□□□ 1
SHROOM3Q8TF72 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
SHROOM3Q8TF72 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHROOM3Q8TF72 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHROOM3Q8TF72 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.31■■□□□ 1
SHROOM3Q8TF72 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHROOM3Q8TF72 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.31■■□□□ 1
SHROOM3Q8TF72 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHROOM3Q8TF72 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.31■■□□□ 1
SHROOM3Q8TF72 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.31■■□□□ 1
SHROOM3Q8TF72 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
SHROOM3Q8TF72 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.31■■□□□ 1
SHROOM3Q8TF72 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHROOM3Q8TF72 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.31■■□□□ 1
SHROOM3Q8TF72 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHROOM3Q8TF72 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SHROOM3Q8TF72 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
SHROOM3Q8TF72 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
SHROOM3Q8TF72 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.3■■□□□ 1
SHROOM3Q8TF72 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
SHROOM3Q8TF72 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms