Protein–RNA interactions for Protein: Q8TB33

LINC01560, Putative uncharacterized protein encoded by LINC01560, humanhuman

Predictions only

Length 94 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01560Q8TB33 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
LINC01560Q8TB33 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
LINC01560Q8TB33 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LINC01560Q8TB33 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LINC01560Q8TB33 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
LINC01560Q8TB33 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
LINC01560Q8TB33 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.5
LINC01560Q8TB33 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LINC01560Q8TB33 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.14■□□□□ 0.49
LINC01560Q8TB33 GCSHP5-201ENST00000443090 522 ntBASIC18.14■□□□□ 0.49
LINC01560Q8TB33 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
LINC01560Q8TB33 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.14■□□□□ 0.49
LINC01560Q8TB33 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.14■□□□□ 0.49
LINC01560Q8TB33 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.14■□□□□ 0.49
LINC01560Q8TB33 AC142381.4-202ENST00000563973 229 ntBASIC18.14■□□□□ 0.49
LINC01560Q8TB33 FAM21FP-204ENST00000608637 956 ntBASIC18.14■□□□□ 0.49
LINC01560Q8TB33 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LINC01560Q8TB33 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.14■□□□□ 0.49
LINC01560Q8TB33 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LINC01560Q8TB33 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC18.14■□□□□ 0.49
LINC01560Q8TB33 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LINC01560Q8TB33 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC18.14■□□□□ 0.49
LINC01560Q8TB33 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LINC01560Q8TB33 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.14■□□□□ 0.49
LINC01560Q8TB33 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.13■□□□□ 0.49
LINC01560Q8TB33 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
LINC01560Q8TB33 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
LINC01560Q8TB33 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LINC01560Q8TB33 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LINC01560Q8TB33 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LINC01560Q8TB33 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.13■□□□□ 0.49
LINC01560Q8TB33 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LINC01560Q8TB33 UNC93B5-201ENST00000530315 699 ntBASIC18.13■□□□□ 0.49
LINC01560Q8TB33 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
LINC01560Q8TB33 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.13■□□□□ 0.49
LINC01560Q8TB33 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.13■□□□□ 0.49
LINC01560Q8TB33 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LINC01560Q8TB33 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
LINC01560Q8TB33 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LINC01560Q8TB33 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LINC01560Q8TB33 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LINC01560Q8TB33 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.12■□□□□ 0.49
LINC01560Q8TB33 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LINC01560Q8TB33 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LINC01560Q8TB33 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LINC01560Q8TB33 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.12■□□□□ 0.49
LINC01560Q8TB33 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.12■□□□□ 0.49
LINC01560Q8TB33 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.12■□□□□ 0.49
LINC01560Q8TB33 AC026366.1-201ENST00000488803 879 ntBASIC18.12■□□□□ 0.49
LINC01560Q8TB33 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.12■□□□□ 0.49
LINC01560Q8TB33 CYP2T3P-201ENST00000601990 817 ntBASIC18.12■□□□□ 0.49
LINC01560Q8TB33 AP006294.2-201ENST00000641667 209 ntBASIC18.12■□□□□ 0.49
LINC01560Q8TB33 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
LINC01560Q8TB33 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LINC01560Q8TB33 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
LINC01560Q8TB33 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LINC01560Q8TB33 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LINC01560Q8TB33 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LINC01560Q8TB33 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.11■□□□□ 0.49
LINC01560Q8TB33 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.11■□□□□ 0.49
LINC01560Q8TB33 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.11■□□□□ 0.49
LINC01560Q8TB33 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LINC01560Q8TB33 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.11■□□□□ 0.49
LINC01560Q8TB33 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LINC01560Q8TB33 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LINC01560Q8TB33 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LINC01560Q8TB33 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC18.11■□□□□ 0.49
LINC01560Q8TB33 AC127496.7-201ENST00000625110 1798 ntBASIC18.11■□□□□ 0.49
LINC01560Q8TB33 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
LINC01560Q8TB33 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC18.11■□□□□ 0.49
LINC01560Q8TB33 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LINC01560Q8TB33 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 AP003097.1-201ENST00000530657 1135 ntBASIC18.1■□□□□ 0.49
LINC01560Q8TB33 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LINC01560Q8TB33 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.09■□□□□ 0.49
LINC01560Q8TB33 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
LINC01560Q8TB33 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LINC01560Q8TB33 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LINC01560Q8TB33 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LINC01560Q8TB33 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
LINC01560Q8TB33 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.09■□□□□ 0.49
LINC01560Q8TB33 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
LINC01560Q8TB33 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LINC01560Q8TB33 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms