Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.02■□□□□ 0.96
HDDC3Q8N4P3 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.02■□□□□ 0.96
HDDC3Q8N4P3 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.02■□□□□ 0.96
HDDC3Q8N4P3 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
HDDC3Q8N4P3 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDDC3Q8N4P3 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.01■□□□□ 0.95
HDDC3Q8N4P3 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HDDC3Q8N4P3 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDDC3Q8N4P3 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.01■□□□□ 0.95
HDDC3Q8N4P3 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDDC3Q8N4P3 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.01■□□□□ 0.95
HDDC3Q8N4P3 AL162412.1-201ENST00000567129 965 ntBASIC21.01■□□□□ 0.95
HDDC3Q8N4P3 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDDC3Q8N4P3 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
HDDC3Q8N4P3 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.01■□□□□ 0.95
HDDC3Q8N4P3 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDDC3Q8N4P3 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
HDDC3Q8N4P3 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21■□□□□ 0.95
HDDC3Q8N4P3 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HDDC3Q8N4P3 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HDDC3Q8N4P3 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21■□□□□ 0.95
HDDC3Q8N4P3 AC012676.1-201ENST00000574705 1949 ntBASIC21■□□□□ 0.95
HDDC3Q8N4P3 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HDDC3Q8N4P3 AC242852.2-201ENST00000615738 1807 ntBASIC21■□□□□ 0.95
HDDC3Q8N4P3 BX276092.2-201ENST00000417668 665 ntBASIC21■□□□□ 0.95
HDDC3Q8N4P3 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21■□□□□ 0.95
HDDC3Q8N4P3 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21■□□□□ 0.95
HDDC3Q8N4P3 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21■□□□□ 0.95
HDDC3Q8N4P3 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21■□□□□ 0.95
HDDC3Q8N4P3 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21■□□□□ 0.95
HDDC3Q8N4P3 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21■□□□□ 0.95
HDDC3Q8N4P3 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21■□□□□ 0.95
HDDC3Q8N4P3 AC068473.5-201ENST00000616428 2072 ntBASIC21■□□□□ 0.95
HDDC3Q8N4P3 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21■□□□□ 0.95
HDDC3Q8N4P3 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 AC245052.3-201ENST00000450182 901 ntBASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 RPS2P52-201ENST00000469610 820 ntBASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 RARRES2P4-201ENST00000514074 484 ntBASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.99■□□□□ 0.95
HDDC3Q8N4P3 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 DUSP5P2-201ENST00000426873 1033 ntBASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 AC092118.2-201ENST00000613495 667 ntBASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
HDDC3Q8N4P3 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HDDC3Q8N4P3 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HDDC3Q8N4P3 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HDDC3Q8N4P3 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HDDC3Q8N4P3 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HDDC3Q8N4P3 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HDDC3Q8N4P3 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HDDC3Q8N4P3 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HDDC3Q8N4P3 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HDDC3Q8N4P3 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HDDC3Q8N4P3 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.97■□□□□ 0.95
HDDC3Q8N4P3 AC233723.2-201ENST00000623798 2106 ntBASIC20.97■□□□□ 0.95
HDDC3Q8N4P3 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HDDC3Q8N4P3 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HDDC3Q8N4P3 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HDDC3Q8N4P3 GUSBP5-202ENST00000510805 1989 ntBASIC20.96■□□□□ 0.95
HDDC3Q8N4P3 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HDDC3Q8N4P3 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.96■□□□□ 0.95
HDDC3Q8N4P3 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HDDC3Q8N4P3 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms