Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 AC211429.1-201ENST00000415277 523 ntBASIC21.52■■□□□ 1.04
SLC44A3Q8N4M1 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SLC44A3Q8N4M1 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.52■■□□□ 1.04
SLC44A3Q8N4M1 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SLC44A3Q8N4M1 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC21.52■■□□□ 1.04
SLC44A3Q8N4M1 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.52■■□□□ 1.04
SLC44A3Q8N4M1 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.52■■□□□ 1.04
SLC44A3Q8N4M1 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SLC44A3Q8N4M1 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
SLC44A3Q8N4M1 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.52■■□□□ 1.03
SLC44A3Q8N4M1 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.52■■□□□ 1.03
SLC44A3Q8N4M1 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SLC44A3Q8N4M1 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SLC44A3Q8N4M1 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SLC44A3Q8N4M1 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.51■■□□□ 1.03
SLC44A3Q8N4M1 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.51■■□□□ 1.03
SLC44A3Q8N4M1 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
SLC44A3Q8N4M1 SNORA78-201ENST00000459373 127 ntBASIC21.51■■□□□ 1.03
SLC44A3Q8N4M1 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.51■■□□□ 1.03
SLC44A3Q8N4M1 AC233263.1-201ENST00000578059 224 ntBASIC21.51■■□□□ 1.03
SLC44A3Q8N4M1 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.51■■□□□ 1.03
SLC44A3Q8N4M1 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
SLC44A3Q8N4M1 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SLC44A3Q8N4M1 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SLC44A3Q8N4M1 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SLC44A3Q8N4M1 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 KRT18P68-201ENST00000392293 1000 ntBASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 MIR1224-201ENST00000408193 85 ntBASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.5■■□□□ 1.03
SLC44A3Q8N4M1 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 FAM210CP-201ENST00000445714 574 ntBASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 AC245052.3-201ENST00000450182 901 ntBASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SLC44A3Q8N4M1 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC44A3Q8N4M1 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.48■■□□□ 1.03
SLC44A3Q8N4M1 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC44A3Q8N4M1 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC44A3Q8N4M1 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SLC44A3Q8N4M1 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.48■■□□□ 1.03
SLC44A3Q8N4M1 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.48■■□□□ 1.03
SLC44A3Q8N4M1 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SLC44A3Q8N4M1 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.48■■□□□ 1.03
SLC44A3Q8N4M1 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SLC44A3Q8N4M1 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC44A3Q8N4M1 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC44A3Q8N4M1 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 REXO2-208ENST00000539754 791 ntTSL 2 BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 SOX15-203ENST00000570788 1093 ntBASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.47■■□□□ 1.03
SLC44A3Q8N4M1 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms