Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRPF39Q86UA1 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.62■■□□□ 1.05
PRPF39Q86UA1 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PRPF39Q86UA1 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PRPF39Q86UA1 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 AC079140.4-201ENST00000507448 529 ntBASIC21.61■■□□□ 1.05
PRPF39Q86UA1 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PRPF39Q86UA1 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
PRPF39Q86UA1 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.6■■□□□ 1.05
PRPF39Q86UA1 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PRPF39Q86UA1 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
PRPF39Q86UA1 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
PRPF39Q86UA1 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PRPF39Q86UA1 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.6■■□□□ 1.05
PRPF39Q86UA1 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.6■■□□□ 1.05
PRPF39Q86UA1 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.6■■□□□ 1.05
PRPF39Q86UA1 AC080038.1-201ENST00000611274 1154 ntBASIC21.6■■□□□ 1.05
PRPF39Q86UA1 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.6■■□□□ 1.05
PRPF39Q86UA1 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.6■■□□□ 1.05
PRPF39Q86UA1 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PRPF39Q86UA1 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
PRPF39Q86UA1 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
PRPF39Q86UA1 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PRPF39Q86UA1 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.59■■□□□ 1.05
PRPF39Q86UA1 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.58■■□□□ 1.05
PRPF39Q86UA1 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.58■■□□□ 1.04
PRPF39Q86UA1 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.58■■□□□ 1.04
PRPF39Q86UA1 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PRPF39Q86UA1 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PRPF39Q86UA1 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PRPF39Q86UA1 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
PRPF39Q86UA1 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PRPF39Q86UA1 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.57■■□□□ 1.04
PRPF39Q86UA1 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.57■■□□□ 1.04
PRPF39Q86UA1 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.57■■□□□ 1.04
PRPF39Q86UA1 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
PRPF39Q86UA1 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PRPF39Q86UA1 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PRPF39Q86UA1 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.57■■□□□ 1.04
PRPF39Q86UA1 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PRPF39Q86UA1 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.56■■□□□ 1.04
PRPF39Q86UA1 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.56■■□□□ 1.04
PRPF39Q86UA1 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PRPF39Q86UA1 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.56■■□□□ 1.04
PRPF39Q86UA1 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PRPF39Q86UA1 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.56■■□□□ 1.04
PRPF39Q86UA1 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PRPF39Q86UA1 ID1-201ENST00000376105 1233 ntBASIC21.56■■□□□ 1.04
PRPF39Q86UA1 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.56■■□□□ 1.04
PRPF39Q86UA1 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.56■■□□□ 1.04
PRPF39Q86UA1 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.56■■□□□ 1.04
PRPF39Q86UA1 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PRPF39Q86UA1 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
PRPF39Q86UA1 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms