Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
CCDC88AQ3V6T2 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
CCDC88AQ3V6T2 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC25.83■■□□□ 1.73
CCDC88AQ3V6T2 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
CCDC88AQ3V6T2 PBX1-209ENST00000485769 834 ntTSL 2 BASIC25.83■■□□□ 1.73
CCDC88AQ3V6T2 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
CCDC88AQ3V6T2 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC25.83■■□□□ 1.73
CCDC88AQ3V6T2 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
CCDC88AQ3V6T2 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC25.83■■□□□ 1.72
CCDC88AQ3V6T2 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
CCDC88AQ3V6T2 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC25.83■■□□□ 1.72
CCDC88AQ3V6T2 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC25.83■■□□□ 1.72
CCDC88AQ3V6T2 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.72
CCDC88AQ3V6T2 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC25.83■■□□□ 1.72
CCDC88AQ3V6T2 REXO1L12P-201ENST00000622156 912 ntBASIC25.83■■□□□ 1.72
CCDC88AQ3V6T2 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CCDC88AQ3V6T2 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC25.82■■□□□ 1.72
CCDC88AQ3V6T2 NME6-213ENST00000451657 871 ntTSL 2 BASIC25.82■■□□□ 1.72
CCDC88AQ3V6T2 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC25.82■■□□□ 1.72
CCDC88AQ3V6T2 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC25.82■■□□□ 1.72
CCDC88AQ3V6T2 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC25.82■■□□□ 1.72
CCDC88AQ3V6T2 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
CCDC88AQ3V6T2 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CCDC88AQ3V6T2 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CCDC88AQ3V6T2 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC25.82■■□□□ 1.72
CCDC88AQ3V6T2 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC25.81■■□□□ 1.72
CCDC88AQ3V6T2 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC88AQ3V6T2 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC88AQ3V6T2 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC88AQ3V6T2 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC25.81■■□□□ 1.72
CCDC88AQ3V6T2 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC88AQ3V6T2 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC25.81■■□□□ 1.72
CCDC88AQ3V6T2 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC25.81■■□□□ 1.72
CCDC88AQ3V6T2 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC88AQ3V6T2 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC88AQ3V6T2 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC88AQ3V6T2 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC25.81■■□□□ 1.72
CCDC88AQ3V6T2 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC25.81■■□□□ 1.72
CCDC88AQ3V6T2 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC25.8■■□□□ 1.72
CCDC88AQ3V6T2 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CCDC88AQ3V6T2 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
CCDC88AQ3V6T2 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
CCDC88AQ3V6T2 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC25.8■■□□□ 1.72
CCDC88AQ3V6T2 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC25.8■■□□□ 1.72
CCDC88AQ3V6T2 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC25.8■■□□□ 1.72
CCDC88AQ3V6T2 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
CCDC88AQ3V6T2 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC25.8■■□□□ 1.72
CCDC88AQ3V6T2 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC25.8■■□□□ 1.72
CCDC88AQ3V6T2 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC25.8■■□□□ 1.72
CCDC88AQ3V6T2 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
CCDC88AQ3V6T2 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CCDC88AQ3V6T2 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
CCDC88AQ3V6T2 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CCDC88AQ3V6T2 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC25.79■■□□□ 1.72
CCDC88AQ3V6T2 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC25.79■■□□□ 1.72
CCDC88AQ3V6T2 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC25.79■■□□□ 1.72
CCDC88AQ3V6T2 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CCDC88AQ3V6T2 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CCDC88AQ3V6T2 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CCDC88AQ3V6T2 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC25.79■■□□□ 1.72
CCDC88AQ3V6T2 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC25.79■■□□□ 1.72
CCDC88AQ3V6T2 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC25.79■■□□□ 1.72
CCDC88AQ3V6T2 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC25.78■■□□□ 1.72
CCDC88AQ3V6T2 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC88AQ3V6T2 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC88AQ3V6T2 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC25.78■■□□□ 1.72
CCDC88AQ3V6T2 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC88AQ3V6T2 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC25.78■■□□□ 1.72
CCDC88AQ3V6T2 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC88AQ3V6T2 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC88AQ3V6T2 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC88AQ3V6T2 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC88AQ3V6T2 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC25.78■■□□□ 1.72
CCDC88AQ3V6T2 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC25.78■■□□□ 1.72
CCDC88AQ3V6T2 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CCDC88AQ3V6T2 AC092368.3-202ENST00000574180 1591 ntBASIC25.77■■□□□ 1.72
CCDC88AQ3V6T2 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CCDC88AQ3V6T2 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CCDC88AQ3V6T2 DHDH-203ENST00000522614 776 ntTSL 5 BASIC25.77■■□□□ 1.72
CCDC88AQ3V6T2 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC25.77■■□□□ 1.72
CCDC88AQ3V6T2 AL445228.2-201ENST00000605589 952 ntBASIC25.77■■□□□ 1.72
CCDC88AQ3V6T2 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC25.77■■□□□ 1.72
CCDC88AQ3V6T2 ISG20-202ENST00000379224 540 ntTSL 3 BASIC25.77■■□□□ 1.72
CCDC88AQ3V6T2 POM121L13P-201ENST00000422362 380 ntBASIC25.77■■□□□ 1.72
CCDC88AQ3V6T2 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC25.77■■□□□ 1.72
CCDC88AQ3V6T2 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CCDC88AQ3V6T2 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CCDC88AQ3V6T2 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
CCDC88AQ3V6T2 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC25.76■■□□□ 1.71
CCDC88AQ3V6T2 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC25.76■■□□□ 1.71
CCDC88AQ3V6T2 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC25.76■■□□□ 1.71
CCDC88AQ3V6T2 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CCDC88AQ3V6T2 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC25.76■■□□□ 1.71
CCDC88AQ3V6T2 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC25.76■■□□□ 1.71
CCDC88AQ3V6T2 SPIB-206ENST00000596074 847 ntTSL 2 BASIC25.76■■□□□ 1.71
CCDC88AQ3V6T2 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CCDC88AQ3V6T2 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC25.76■■□□□ 1.71
CCDC88AQ3V6T2 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CCDC88AQ3V6T2 RCN1P1-201ENST00000400413 996 ntBASIC25.75■■□□□ 1.71
CCDC88AQ3V6T2 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC25.75■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms