Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC22.44■■□□□ 1.18
CHD9Q3L8U1 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
CHD9Q3L8U1 AC243732.1-201ENST00000612648 864 ntBASIC22.44■■□□□ 1.18
CHD9Q3L8U1 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC22.44■■□□□ 1.18
CHD9Q3L8U1 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
CHD9Q3L8U1 AC003102.1-202ENST00000563394 1796 ntBASIC22.43■■□□□ 1.18
CHD9Q3L8U1 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CHD9Q3L8U1 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC22.43■■□□□ 1.18
CHD9Q3L8U1 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC22.43■■□□□ 1.18
CHD9Q3L8U1 AC120498.10-201ENST00000621827 505 ntBASIC22.43■■□□□ 1.18
CHD9Q3L8U1 AC133561.5-201ENST00000635547 218 ntBASIC22.43■■□□□ 1.18
CHD9Q3L8U1 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CHD9Q3L8U1 DHDH-203ENST00000522614 776 ntTSL 5 BASIC22.43■■□□□ 1.18
CHD9Q3L8U1 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC22.43■■□□□ 1.18
CHD9Q3L8U1 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CHD9Q3L8U1 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CHD9Q3L8U1 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC22.42■■□□□ 1.18
CHD9Q3L8U1 CD177P1-201ENST00000606252 935 ntBASIC22.42■■□□□ 1.18
CHD9Q3L8U1 AL353708.3-201ENST00000610272 989 ntBASIC22.42■■□□□ 1.18
CHD9Q3L8U1 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC22.42■■□□□ 1.18
CHD9Q3L8U1 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC22.42■■□□□ 1.18
CHD9Q3L8U1 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC22.42■■□□□ 1.18
CHD9Q3L8U1 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CHD9Q3L8U1 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CHD9Q3L8U1 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC22.42■■□□□ 1.18
CHD9Q3L8U1 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CHD9Q3L8U1 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
CHD9Q3L8U1 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC22.41■■□□□ 1.18
CHD9Q3L8U1 AC124016.1-201ENST00000609552 612 ntBASIC22.41■■□□□ 1.18
CHD9Q3L8U1 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CHD9Q3L8U1 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC22.41■■□□□ 1.18
CHD9Q3L8U1 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
CHD9Q3L8U1 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CHD9Q3L8U1 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CHD9Q3L8U1 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CHD9Q3L8U1 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CHD9Q3L8U1 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC22.41■■□□□ 1.18
CHD9Q3L8U1 KRT17P2-201ENST00000300992 1314 ntBASIC22.41■■□□□ 1.18
CHD9Q3L8U1 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC22.41■■□□□ 1.18
CHD9Q3L8U1 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 AL589743.5-201ENST00000616611 1050 ntBASIC22.4■■□□□ 1.18
CHD9Q3L8U1 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 NT5C-211ENST00000582170 653 ntTSL 3 BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 AC092865.7-201ENST00000641832 219 ntBASIC22.4■■□□□ 1.18
CHD9Q3L8U1 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC22.4■■□□□ 1.18
CHD9Q3L8U1 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CHD9Q3L8U1 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CHD9Q3L8U1 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC22.39■■□□□ 1.18
CHD9Q3L8U1 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CHD9Q3L8U1 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
CHD9Q3L8U1 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC22.39■■□□□ 1.17
CHD9Q3L8U1 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC22.39■■□□□ 1.17
CHD9Q3L8U1 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CHD9Q3L8U1 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 SERF2-207ENST00000409614 582 ntTSL 2 BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 MIR4785-201ENST00000585005 73 ntBASIC22.38■■□□□ 1.17
CHD9Q3L8U1 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 AC087742.1-201ENST00000575880 1738 ntBASIC22.38■■□□□ 1.17
CHD9Q3L8U1 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC22.38■■□□□ 1.17
CHD9Q3L8U1 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC22.37■■□□□ 1.17
CHD9Q3L8U1 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CHD9Q3L8U1 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CHD9Q3L8U1 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC22.37■■□□□ 1.17
CHD9Q3L8U1 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CHD9Q3L8U1 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CHD9Q3L8U1 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC22.37■■□□□ 1.17
CHD9Q3L8U1 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
CHD9Q3L8U1 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
CHD9Q3L8U1 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC22.37■■□□□ 1.17
CHD9Q3L8U1 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
CHD9Q3L8U1 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
CHD9Q3L8U1 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC22.37■■□□□ 1.17
CHD9Q3L8U1 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC22.37■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms