Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLRN1P58418 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.65■□□□□ 0.58
CLRN1P58418 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLRN1P58418 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CLRN1P58418 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CLRN1P58418 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.64■□□□□ 0.58
CLRN1P58418 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLRN1P58418 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLRN1P58418 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CLRN1P58418 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLRN1P58418 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLRN1P58418 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLRN1P58418 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CLRN1P58418 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLRN1P58418 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CLRN1P58418 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.64■□□□□ 0.57
CLRN1P58418 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CLRN1P58418 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.64■□□□□ 0.57
CLRN1P58418 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CLRN1P58418 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLRN1P58418 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.64■□□□□ 0.57
CLRN1P58418 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLRN1P58418 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.64■□□□□ 0.57
CLRN1P58418 AL049796.1-201ENST00000565336 1766 ntBASIC18.63■□□□□ 0.57
CLRN1P58418 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN1P58418 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.63■□□□□ 0.57
CLRN1P58418 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN1P58418 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN1P58418 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN1P58418 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN1P58418 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CLRN1P58418 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.63■□□□□ 0.57
CLRN1P58418 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN1P58418 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN1P58418 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN1P58418 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.63■□□□□ 0.57
CLRN1P58418 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN1P58418 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.63■□□□□ 0.57
CLRN1P58418 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN1P58418 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.62■□□□□ 0.57
CLRN1P58418 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN1P58418 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CLRN1P58418 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.62■□□□□ 0.57
CLRN1P58418 AC008175.2-201ENST00000612840 297 ntBASIC18.62■□□□□ 0.57
CLRN1P58418 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN1P58418 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN1P58418 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN1P58418 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN1P58418 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN1P58418 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.62■□□□□ 0.57
CLRN1P58418 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN1P58418 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN1P58418 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN1P58418 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CLRN1P58418 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLRN1P58418 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLRN1P58418 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLRN1P58418 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.61■□□□□ 0.57
CLRN1P58418 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.61■□□□□ 0.57
CLRN1P58418 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLRN1P58418 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CLRN1P58418 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLRN1P58418 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.61■□□□□ 0.57
CLRN1P58418 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.61■□□□□ 0.57
CLRN1P58418 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.61■□□□□ 0.57
CLRN1P58418 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.61■□□□□ 0.57
CLRN1P58418 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.61■□□□□ 0.57
CLRN1P58418 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.61■□□□□ 0.57
CLRN1P58418 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.61■□□□□ 0.57
CLRN1P58418 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.61■□□□□ 0.57
CLRN1P58418 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLRN1P58418 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLRN1P58418 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLRN1P58418 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN1P58418 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.6■□□□□ 0.57
CLRN1P58418 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN1P58418 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.6■□□□□ 0.57
CLRN1P58418 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN1P58418 KRT18P14-201ENST00000534205 1250 ntBASIC18.6■□□□□ 0.57
CLRN1P58418 CCDC92B-201ENST00000575506 885 ntBASIC18.6■□□□□ 0.57
CLRN1P58418 TERF1P2-201ENST00000583350 1212 ntBASIC18.6■□□□□ 0.57
CLRN1P58418 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN1P58418 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN1P58418 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.6■□□□□ 0.57
CLRN1P58418 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN1P58418 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.6■□□□□ 0.57
CLRN1P58418 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN1P58418 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN1P58418 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CLRN1P58418 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.6■□□□□ 0.57
CLRN1P58418 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN1P58418 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.59■□□□□ 0.57
CLRN1P58418 AP004607.4-201ENST00000530158 1459 ntBASIC18.59■□□□□ 0.57
CLRN1P58418 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLRN1P58418 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLRN1P58418 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CLRN1P58418 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.59■□□□□ 0.57
CLRN1P58418 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLRN1P58418 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CLRN1P58418 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms