Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.94■□□□□ 0.3
CDX1P47902 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC16.94■□□□□ 0.3
CDX1P47902 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CDX1P47902 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC16.94■□□□□ 0.3
CDX1P47902 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CDX1P47902 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CDX1P47902 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC16.94■□□□□ 0.3
CDX1P47902 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC16.94■□□□□ 0.3
CDX1P47902 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CDX1P47902 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC16.94■□□□□ 0.3
CDX1P47902 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CDX1P47902 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC16.94■□□□□ 0.3
CDX1P47902 AC087623.3-201ENST00000607047 1098 ntBASIC16.94■□□□□ 0.3
CDX1P47902 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CDX1P47902 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CDX1P47902 AC087289.5-201ENST00000586076 3175 ntBASIC16.94■□□□□ 0.3
CDX1P47902 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
CDX1P47902 GCA-201ENST00000233612 1694 ntTSL 2 BASIC16.94■□□□□ 0.3
CDX1P47902 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CDX1P47902 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CDX1P47902 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC16.94■□□□□ 0.3
CDX1P47902 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CDX1P47902 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
CDX1P47902 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
CDX1P47902 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CDX1P47902 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CDX1P47902 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CDX1P47902 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CDX1P47902 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CDX1P47902 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC16.93■□□□□ 0.3
CDX1P47902 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC16.93■□□□□ 0.3
CDX1P47902 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC16.93■□□□□ 0.3
CDX1P47902 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CDX1P47902 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC16.93■□□□□ 0.3
CDX1P47902 MFF-208ENST00000409616 1247 ntTSL 5 BASIC16.93■□□□□ 0.3
CDX1P47902 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CDX1P47902 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
CDX1P47902 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CDX1P47902 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CDX1P47902 AC026471.1-201ENST00000564629 3026 ntBASIC16.93■□□□□ 0.3
CDX1P47902 FAM99A-202ENST00000538190 1989 ntBASIC16.93■□□□□ 0.3
CDX1P47902 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.93■□□□□ 0.3
CDX1P47902 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CDX1P47902 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC16.92■□□□□ 0.3
CDX1P47902 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX1P47902 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CDX1P47902 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CDX1P47902 OXCT2P1-201ENST00000447263 1535 ntBASIC16.92■□□□□ 0.3
CDX1P47902 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX1P47902 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CDX1P47902 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX1P47902 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX1P47902 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC16.92■□□□□ 0.3
CDX1P47902 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CDX1P47902 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CDX1P47902 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CDX1P47902 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC16.92■□□□□ 0.3
CDX1P47902 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC16.92■□□□□ 0.3
CDX1P47902 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC16.92■□□□□ 0.3
CDX1P47902 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC16.92■□□□□ 0.3
CDX1P47902 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX1P47902 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX1P47902 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX1P47902 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CDX1P47902 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX1P47902 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX1P47902 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX1P47902 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.92■□□□□ 0.3
CDX1P47902 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC16.92■□□□□ 0.3
CDX1P47902 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC16.92■□□□□ 0.3
CDX1P47902 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX1P47902 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC16.92■□□□□ 0.3
CDX1P47902 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC16.92■□□□□ 0.3
CDX1P47902 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CDX1P47902 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC16.91■□□□□ 0.3
CDX1P47902 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC16.91■□□□□ 0.3
CDX1P47902 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CDX1P47902 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CDX1P47902 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC16.91■□□□□ 0.3
CDX1P47902 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC16.91■□□□□ 0.3
CDX1P47902 AC034268.1-201ENST00000441047 882 ntBASIC16.91■□□□□ 0.3
CDX1P47902 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC16.91■□□□□ 0.3
CDX1P47902 RAB43-208ENST00000615093 783 ntTSL 5 BASIC16.91■□□□□ 0.3
CDX1P47902 ANKRD20A6P-201ENST00000618763 204 ntBASIC16.91■□□□□ 0.3
CDX1P47902 MIR6084-201ENST00000622012 110 ntBASIC16.91■□□□□ 0.3
CDX1P47902 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC16.91■□□□□ 0.3
CDX1P47902 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CDX1P47902 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX1P47902 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX1P47902 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX1P47902 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX1P47902 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX1P47902 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX1P47902 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CDX1P47902 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX1P47902 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC16.9■□□□□ 0.3
CDX1P47902 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX1P47902 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC16.9■□□□□ 0.3
CDX1P47902 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.9■□□□□ 0.3
CDX1P47902 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms