Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
HTTP42858 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
HTTP42858 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HTTP42858 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HTTP42858 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HTTP42858 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC23.81■■□□□ 1.4
HTTP42858 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC23.81■■□□□ 1.4
HTTP42858 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC23.81■■□□□ 1.4
HTTP42858 RNF146-206ENST00000480444 843 ntTSL 2 BASIC23.81■■□□□ 1.4
HTTP42858 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
HTTP42858 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
HTTP42858 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
HTTP42858 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC23.8■■□□□ 1.4
HTTP42858 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC23.8■■□□□ 1.4
HTTP42858 RBM42-202ENST00000586618 771 ntTSL 3 BASIC23.8■■□□□ 1.4
HTTP42858 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC23.8■■□□□ 1.4
HTTP42858 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
HTTP42858 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HTTP42858 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC23.8■■□□□ 1.4
HTTP42858 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HTTP42858 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC23.79■■□□□ 1.4
HTTP42858 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
HTTP42858 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
HTTP42858 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC23.79■■□□□ 1.4
HTTP42858 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HTTP42858 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC23.79■■□□□ 1.4
HTTP42858 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC23.79■■□□□ 1.4
HTTP42858 AC243732.1-201ENST00000612648 864 ntBASIC23.79■■□□□ 1.4
HTTP42858 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HTTP42858 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC23.79■■□□□ 1.4
HTTP42858 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
HTTP42858 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC23.79■■□□□ 1.4
HTTP42858 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
HTTP42858 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC23.79■■□□□ 1.4
HTTP42858 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HTTP42858 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC23.78■■□□□ 1.4
HTTP42858 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC23.78■■□□□ 1.4
HTTP42858 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC23.78■■□□□ 1.4
HTTP42858 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC23.78■■□□□ 1.4
HTTP42858 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC23.78■■□□□ 1.4
HTTP42858 TPM1-226ENST00000560959 925 ntTSL 2 BASIC23.78■■□□□ 1.4
HTTP42858 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HTTP42858 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HTTP42858 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HTTP42858 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
HTTP42858 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HTTP42858 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HTTP42858 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC23.77■■□□□ 1.4
HTTP42858 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
HTTP42858 PBX1-209ENST00000485769 834 ntTSL 2 BASIC23.77■■□□□ 1.4
HTTP42858 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC23.77■■□□□ 1.4
HTTP42858 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
HTTP42858 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HTTP42858 AC137767.1-201ENST00000602918 1920 ntBASIC23.77■■□□□ 1.4
HTTP42858 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC23.77■■□□□ 1.4
HTTP42858 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HTTP42858 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HTTP42858 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HTTP42858 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HTTP42858 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
HTTP42858 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC23.77■■□□□ 1.4
HTTP42858 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
HTTP42858 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC23.77■■□□□ 1.4
HTTP42858 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC23.77■■□□□ 1.4
HTTP42858 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC23.77■■□□□ 1.4
HTTP42858 AL589743.5-201ENST00000616611 1050 ntBASIC23.77■■□□□ 1.4
HTTP42858 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC23.77■■□□□ 1.4
HTTP42858 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
HTTP42858 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HTTP42858 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HTTP42858 AC092068.2-201ENST00000590491 1708 ntBASIC23.77■■□□□ 1.4
HTTP42858 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
HTTP42858 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
HTTP42858 TK2-204ENST00000525974 1178 ntTSL 2 BASIC23.77■■□□□ 1.4
HTTP42858 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
HTTP42858 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC23.76■■□□□ 1.39
HTTP42858 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
HTTP42858 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
HTTP42858 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC23.76■■□□□ 1.39
HTTP42858 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
HTTP42858 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
HTTP42858 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
HTTP42858 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC23.76■■□□□ 1.39
HTTP42858 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
HTTP42858 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
HTTP42858 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
HTTP42858 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC23.76■■□□□ 1.39
HTTP42858 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
HTTP42858 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
HTTP42858 LY6E-205ENST00000519611 635 ntTSL 3 BASIC23.76■■□□□ 1.39
HTTP42858 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC23.76■■□□□ 1.39
HTTP42858 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC23.76■■□□□ 1.39
HTTP42858 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC23.76■■□□□ 1.39
HTTP42858 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC23.76■■□□□ 1.39
HTTP42858 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
HTTP42858 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC23.76■■□□□ 1.39
HTTP42858 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
HTTP42858 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
HTTP42858 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
HTTP42858 AC003102.1-202ENST00000563394 1796 ntBASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms