Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
HADHAP40939 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.1■□□□□ 0.97
HADHAP40939 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
HADHAP40939 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
HADHAP40939 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.1■□□□□ 0.97
HADHAP40939 EEF1DP3-203ENST00000566025 782 ntBASIC21.1■□□□□ 0.97
HADHAP40939 CCDC92B-201ENST00000575506 885 ntBASIC21.1■□□□□ 0.97
HADHAP40939 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HADHAP40939 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HADHAP40939 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HADHAP40939 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HADHAP40939 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HADHAP40939 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HADHAP40939 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HADHAP40939 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
HADHAP40939 AL049796.1-201ENST00000565336 1766 ntBASIC21.1■□□□□ 0.97
HADHAP40939 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HADHAP40939 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HADHAP40939 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HADHAP40939 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HADHAP40939 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HADHAP40939 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HADHAP40939 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HADHAP40939 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.09■□□□□ 0.97
HADHAP40939 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HADHAP40939 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.09■□□□□ 0.97
HADHAP40939 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.09■□□□□ 0.97
HADHAP40939 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.09■□□□□ 0.97
HADHAP40939 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.09■□□□□ 0.97
HADHAP40939 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.09■□□□□ 0.97
HADHAP40939 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.09■□□□□ 0.97
HADHAP40939 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.09■□□□□ 0.97
HADHAP40939 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.09■□□□□ 0.97
HADHAP40939 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HADHAP40939 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HADHAP40939 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HADHAP40939 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HADHAP40939 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
HADHAP40939 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HADHAP40939 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HADHAP40939 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HADHAP40939 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HADHAP40939 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HADHAP40939 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.08■□□□□ 0.97
HADHAP40939 KRT18P14-201ENST00000534205 1250 ntBASIC21.08■□□□□ 0.97
HADHAP40939 MIR5787-201ENST00000611784 55 ntBASIC21.08■□□□□ 0.97
HADHAP40939 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HADHAP40939 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HADHAP40939 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HADHAP40939 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.08■□□□□ 0.96
HADHAP40939 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.08■□□□□ 0.96
HADHAP40939 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.07■□□□□ 0.96
HADHAP40939 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HADHAP40939 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HADHAP40939 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.07■□□□□ 0.96
HADHAP40939 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HADHAP40939 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.07■□□□□ 0.96
HADHAP40939 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HADHAP40939 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.07■□□□□ 0.96
HADHAP40939 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
HADHAP40939 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.07■□□□□ 0.96
HADHAP40939 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.07■□□□□ 0.96
HADHAP40939 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HADHAP40939 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HADHAP40939 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.07■□□□□ 0.96
HADHAP40939 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HADHAP40939 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
HADHAP40939 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
HADHAP40939 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
HADHAP40939 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
HADHAP40939 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HADHAP40939 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HADHAP40939 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.06■□□□□ 0.96
HADHAP40939 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HADHAP40939 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
HADHAP40939 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HADHAP40939 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
HADHAP40939 AC097381.1-201ENST00000429019 1296 ntBASIC21.06■□□□□ 0.96
HADHAP40939 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.06■□□□□ 0.96
HADHAP40939 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HADHAP40939 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HADHAP40939 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HADHAP40939 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HADHAP40939 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
HADHAP40939 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
HADHAP40939 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HADHAP40939 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
HADHAP40939 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HADHAP40939 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HADHAP40939 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HADHAP40939 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.05■□□□□ 0.96
HADHAP40939 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
HADHAP40939 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.05■□□□□ 0.96
HADHAP40939 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HADHAP40939 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HADHAP40939 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HADHAP40939 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HADHAP40939 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HADHAP40939 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HADHAP40939 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms